The original data set included four individuals of each strain under baseline (B) conditions and eight individuals from each strain for each of the treatment groups, chronic mild stress (C), acute restraint (R), and chronic mild stress followed by acute retraint (CR). However, some samples have been removed due to technical problems with tissue collection or microarray performance.
MTA_ID | MTA prefix | GN_ID | FM_ID | Mouse_ID | CaseId | Strain | Strain_Code | Treatment code | NanoDrop, ng/ul | NanoDrop, 260/280 | NanoDrop, 260/230 | Agilent, ng/µl | RIN | Notes |
1 | BCJ 1.CMS_ | D-B-215-1 | CMS_000215 | 215 | 020615.01 | DBA/2J | D | B | 163.61 | 1.9 | 2.31 | 130 | 8.6 | |
2 | BCJ 2.CMS_ | D-C-86-1 | CMS_000086 | 86 | 012115.23 | DBA/2J | D | C | 98.51 | 1.79 | 2.4 | 329 | 8.8 | |
3 | BCJ 3.CMS_ | D-CR-94-1 | CMS_000094 | 94 | 012115.16 | DBA/2J | D | CR | 162.78 | 1.87 | 2.38 | 166 | 9.2 | |
4 | BCJ 4.CMS_ | D-R-133-1 | CMS_000133 | 133 | 012115.14 | DBA/2J | D | R | 88.95 | 1.82 | 2.45 | 90 | 8.2 | |
5 | BCJ 5.CMS_ | B-B-208-1 | CMS_000208 | 208 | 012215.04 | C57BL/6J | B | B | 129.24 | 1.86 | 2.41 | 223 | 8.1 | |
6 | BCJ 6.CMS_ | B-C-101-1 | CMS_000101 | 101 | 012115.25 | C57BL/6J | B | C | 72.29 | 1.86 | 2.26 | 135 | 9.2 | |
7 | BCJ 7.CMS_ | B-CR-109-1 | CMS_000109 | 109 | 012115.21 | C57BL/6J | B | CR | 158.56 | 1.7 | 2.46 | 305 | 8.8 | Microarray outlier; sample removed. |
8 | BCJ 8.CMS_ | B-R-143-1 | CMS_000143 | 143 | 012215.08 | C57BL/6J | B | R | 161.57 | 1.86 | 2.38 | 217 | 9.3 | |
9 | BCJ 9.CMS_ | N-B-210-1 | CMS_000210 | 210 | 012115.04 | C57BL/6NJ | N | B | 132.39 | 1.89 | 2.3 | 192 | 8.5 | |
10 | BCJ 10.CMS_ | N-C-117-1 | CMS_000117 | 117 | 012115.30 | C57BL/6NJ | N | C | 151.43 | 1.91 | 2.38 | 187 | 8.8 | |
11 | BCJ 11.CMS_ | N-CR-126-1 | CMS_000126 | 126 | 012115.33 | C57BL/6NJ | N | CR | 137.87 | 1.88 | 2.29 | 76 | 9 | |
12 | BCJ 12.CMS_ | N-R-152-1 | CMS_000152 | 152 | 012215.29 | C57BL/6NJ | N | R | 197.95 | 1.88 | 2.35 | 150 | 9.1 | |
13 | BCJ 13.CMS_ | D-B-216-1 | CMS_000216 | 216 | 020615.02 | DBA/2J | D | B | 98.64 | 1.91 | 2.03 | 60 | 8.6 | |
15 | BCJ 15.CMS_ | D-CR-93-1 | CMS_000093 | 93 | 012115.11 | DBA/2J | D | CR | 71.36 | 1.83 | 2.25 | 109 | 8.5 | |
16 | BCJ 16.CMS_ | D-R-134-1 | CMS_000134 | 134 | 012115.17 | DBA/2J | D | R | 73.49 | 1.85 | 2.43 | 149 | 8.2 | |
17 | BCJ 17.CMS_ | B-B-205-1 | CMS_000205 | 205 | 012015.02 | C57BL/6J | B | B | 174.78 | 2.02 | 2.21 | 266 | 8.9 | |
18 | BCJ 18.CMS_ | B-C-104-1 | CMS_000104 | 104 | 012215.30 | C57BL/6J | B | C | 84.7 | 2.64 | 2.01 | 168 | 9.2 | |
19 | BCJ 19.CMS_ | B-CR-110-1 | CMS_000110 | 110 | 012115.26 | C57BL/6J | B | CR | 136.7 | 1.96 | 2.16 | 178 | 9.5 | |
20 | BCJ 20.CMS_ | B-R-141-1 | CMS_000141 | 141 | 012115.22 | C57BL/6J | B | R | 86.04 | 20.2 | 2.53 | 208 | 8.9 | |
21 | BCJ 21.CMS_ | N-B-209-1 | CMS_000209 | 209 | 012015.04 | C57BL/6NJ | N | B | 98.3 | 1.99 | 2.35 | 169 | 8.8 | |
22 | BCJ 22.CMS_ | N-C-119-1 | CMS_000119 | 119 | 012215.18 | C57BL/6NJ | N | C | 94.63 | 1.96 | 2.36 | 179 | 8.5 | |
24 | BCJ 24.CMS_ | N-R-150-1 | CMS_000150 | 150 | 012115.29 | C57BL/6NJ | N | R | 407.34 | 1.98 | 2.24 | 425 | 7.5 | Microarray outlier; sample removed. |
25 | BCJ 25.CMS_ | D-B-217-1 | CMS_000217 | 217 | 020615.03 | DBA/2J | D | B | 84.61 | 1.82 | 2.18 | 177 | 7.9 | |
26 | BCJ 26.CMS_ | D-C-85-1 | CMS_000085 | 85 | 012115.20 | DBA/2J | D | C | 172.86 | 1.98 | 2.27 | 288 | 8.9 | |
27 | BCJ 27.CMS_ | D-CR-95-1 | CMS_000095 | 95 | 012215.16 | DBA/2J | D | CR | 109.8 | 1.98 | 2.47 | 157 | 8.9 | |
28 | BCJ 28.CMS_ | D-R-132-1 | CMS_000132 | 132 | 012015.29 | DBA/2J | D | R | 140.82 | 1.91 | 2.47 | 318 | 9 | |
29 | BCJ 29.CMS_ | B-B-207-1 | CMS_000207 | 207 | 012215.02 | C57BL/6J | B | B | 96.25 | 1.89 | 2.67 | 176 | 8.5 | |
30 | BCJ 30.CMS_ | B-C-102-1 | CMS_000102 | 102 | 012115.28 | C57BL/6J | B | C | 129.69 | 1.89 | 2.32 | 105 | 8.7 | |
31 | BCJ 31.CMS_ | B-CR-111-1 | CMS_000111 | 111 | 012215.26 | C57BL/6J | B | CR | 165.67 | 1.84 | 2.31 | 176 | 9.5 | |
32 | BCJ 32.CMS_ | B-R-142-1 | CMS_000142 | 142 | 012115.24 | C57BL/6J | B | R | 116.93 | 1.84 | 2.22 | 96 | 9.4 | |
33 | BCJ 33.CMS_ | N-B-211-1 | CMS_000211 | 211 | 012315.02 | C57BL/6NJ | N | B | 106 | 2.09 | 2.29 | 156 | 7.4 | |
34 | BCJ 34.CMS_ | N-C-118-1 | CMS_000118 | 118 | 012115.32 | C57BL/6NJ | N | C | 219.2 | 1.91 | 2.34 | 197 | 9.2 | |
35 | BCJ 35.CMS_ | N-CR-127-1 | CMS_000127 | 127 | 012215.33 | C57BL/6NJ | N | CR | 89 | 2 | 2.56 | 157 | 9.4 | |
36 | BCJ 36.CMS_ | N-R-149-1 | CMS_000149 | 149 | 012115.27 | C57BL/6NJ | N | R | 72.91 | 1.84 | 2.14 | 107 | 8.6 | |
37 | BCJ 37.CMS_ | D-B-218-1 | CMS_000218 | 218 | 020615.04 | DBA/2J | D | B | 154.34 | 1.99 | 1.99 | 119 | 9.3 | |
38 | BCJ 38.CMS_ | D-C-87-1 | CMS_000087 | 87 | 012215.13 | DBA/2J | D | C | 105.3 | 1.98 | 2.21 | 109 | 7.4 | |
39 | BCJ 39.CMS_ | D-CR-97-1 | CMS_000097 | 97 | 012315.05 | DBA/2J | D | CR | 55.85 | 1.89 | 2.41 | 85 | 8.3 | |
40 | BCJ 40.CMS_ | D-R-137-1 | CMS_000137 | 137 | 012315.06 | DBA/2J | D | R | 128.97 | 2.01 | 2.24 | 159 | 8.1 | Microarray outlier; sample removed. |
41 | BCJ 41.CMS_ | B-B-206-1 | CMS_000206 | 206 | 012115.02 | C57BL/6J | B | B | 159.89 | 2.03 | 2.1 | 273 | 7.8 | |
42 | BCJ 42.CMS_ | B-C-103-1 | CMS_000103 | 103 | 012215.15 | C57BL/6J | B | C | 111.79 | 1.87 | 2.45 | 160 | 8.9 | |
43 | BCJ 43.CMS_ | B-CR-112-1 | CMS_000112 | 112 | 012215.31 | C57BL/6J | B | CR | 172.14 | 1.86 | 2.22 | 180 | 9.4 | |
44 | BCJ 44.CMS_ | B-R-145-1 | CMS_000145 | 145 | 012315.12 | C57BL/6J | B | R | 103.74 | 2.06 | 2.17 | 99 | 8.9 | |
45 | BCJ 45.CMS_ | N-B-212-1 | CMS_000212 | 212 | 012315.04 | C57BL/6NJ | N | B | 189.5 | 1.9 | 2.4 | 248 | 8.5 | |
47 | BCJ 47.CMS_ | N-CR-128-1 | CMS_000128 | 128 | 012215.34 | C57BL/6NJ | N | CR | 90.65 | 2.07 | 2.25 | 189 | 9.3 | |
48 | BCJ 48.CMS_ | N-R-154-1 | CMS_000154 | 154 | 012315.29 | C57BL/6NJ | N | R | 114.73 | 1.94 | 2.34 | 167 | 8.8 | |
49 | BCJ 49.CMS_ | D-C-88-1 | CMS_000088 | 88 | 012215.28 | DBA/2J | D | C | 96 | 1.76 | 2.55 | 158 | 8.5 | |
50 | BCJ 50.CMS_ | D-CR-96-1 | CMS_000096 | 96 | 012215.21 | DBA/2J | D | CR | 133.66 | 1.78 | 2.36 | 203 | 8.3 | |
51 | BCJ 51.CMS_ | D-R-138-1 | CMS_000138 | 138 | 012315.22 | DBA/2J | D | R | 127.13 | 1.76 | 2.24 | 81 | 9.3 | |
52 | BCJ 52.CMS_ | B-C-105-1 | CMS_000105 | 105 | 012315.13 | C57BL/6J | B | C | 203.24 | 1.92 | 2.35 | 310 | 7 | |
53 | BCJ 53.CMS_ | B-CR-113-1 | CMS_000113 | 113 | 012315.09 | C57BL/6J | B | CR | 168.67 | 1.82 | 2.41 | 240 | 9.1 | |
55 | BCJ 55.CMS_ | N-C-120-1 | CMS_000120 | 120 | 012215.32 | C57BL/6NJ | N | C | 73.67 | 1.93 | 2.31 | 371 | 8.4 | |
56 | BCJ 56.CMS_ | N-CR-125-1 | CMS_000125 | 125 | 012115.31 | C57BL/6NJ | N | CR | 121.93 | 1.92 | 2.26 | 73 | 8.3 | |
59 | BCJ 59.CMS_ | N-C-122-1 | CMS_000122 | 122 | 012315.30 | C57BL/6NJ | N | C | 131.74 | 1.85 | 2.42 | 186 | 9.4 | |
60 | BCJ 60.CMS_ | D-C-89-1 | CMS_000089 | 89 | 012315.10 | DBA/2J | D | C | 78 | 1.77 | 2.32 | 74 | 8.9 | |
62 | BCJ 62.CMS_ | N-CR-130-1 | CMS_000130 | 130 | 012315.34 | C57BL/6NJ | N | CR | 100.74 | 1.71 | 2.36 | 113 | 8.8 | |
65 | BCJ 65.CMS_ | B-R-144-1 | CMS_000144 | 144 | 012215.27 | C57BL/6J | B | R | 80.1 | 1.81 | 2.3 | 95 | 8.9 | |
66 | BCJ 66.CMS_ | N-R-151-1 | CMS_000151 | 151 | 012215.12 | C57BL/6NJ | N | R | 80.22 | 1.77 | 2.2 | 116 | 8.6 |