The SM cross was originally made to map barley grain quality traits; Steptoe is high-yielding barley cultivar used for animal feeding, but Morex has good malting barley characteristics (Hayes et al 1993). Many agronomic quality traits have been mapped using this population (for the lists see BeerGenes web-site http://gnome.agrenv.mcgill.ca/bg/).
The sample used in this study consists of 150 Steptoe x Morex doubled haploid recombinant lines (Kleinhofs et al. 1993) was used to obtain embryo-derived tissue. For the seedling leaf tissue a subset of 35 lines was used. This subset was selected based on evenly spaced crossovers along each of seven barley chromosomes. The expression data of 11 DH lines has been removed from both, embryo and leaf, leaving for the analysis 129 lines with embryo expression data and a subset of 30 lines with seedling leaf expression data. The lines were removed from the analysis after error checking; discrepancies with genotyping data were found. We left all 150 lines in the embryo Apr06 data set and the full data set is available from the ArrayExpress. The following table lists line IDs and corresponding CEL file IDs, also indicating:
1) pedigree; shows the direction of the cross that was used to produce the original F1. The parental plants were given letter codes of A - Z. For example, SM1 was derived from an F1 that was generated by crossing Steptoe plant "B" as a female with Morex plant "F" as a male.
2) 'minimapper' subset - MINI;
3) lines that have expression data removed - ERROR:
| Order # | Line ID | Permanent Oregon ID | Cross direction |
CEL file names
|
Mini-mapper set | Error check | ||
| embryo data-set | leaf data-set | embryo data-set | leaf data-set | |||||
| 1 | SM001 | 2907001 | Steptoe/Morex(BxF) | AD_SCRI_82.CEL | OK | |||
| 2 | SM002 | 2907002 | Steptoe/Morex(BxF) | AD_SCRI_1.CEL | OK | |||
| 3 | SM003 | 2907003 | Morex/Steptoe(CxF) | AD_SCRI_19.CEL | OK | |||
| 4 | SM004 | 2907004 | Morex/Steptoe(CxF) | AD_SCRI_3.CEL | 0521-1_SetA1.CEL | SMmini | OK | OK |
| 5 | SM005 | 2907005 | Steptoe/Morex(BxH) | AD_SCRI_88.CEL | OK | |||
| 6 | SM006 | 2907006 | Morex/Steptoe(CxF) | AD_SCRI_48.CEL | OK | |||
| 7 | SM007 | 2907007 | Steptoe/Morex(BxH) | AD_SCRI_35.CEL | 0521-2_SetA2.CEL | SMmini | OK | OK |
| 8 | SM009 | 2907009 | Steptoe/Morex(BxF) | AD_SCRI_2.CEL | OK | |||
| 9 | SM010 | 2907010 | Morex/Steptoe(IxE) | AD_SCRI_42.CEL | OK | |||
| 10 | SM011 | 2907011 | Steptoe/Morex(QxG) | AD_SCRI_10.CEL | OK | |||
| 11 | SM012 | 2907012 | Morex/Steptoe(CxF) | AD_SCRI_45.CEL | 0521-3_SetA3.CEL | SMmini | ERROR | ERROR |
| 12 | SM013 | 2907013 | Morex/Steptoe(IxE) | AD_SCRI_78.CEL | 0521-4_SetA4.CEL | SMmini | ERROR | ERROR |
| 13 | SM014 | 2907014 | Steptoe/Morex(BxH) | AD_SCRI_18.CEL | OK | |||
| 14 | SM015 | 2907015 | Steptoe/Morex(BxH) | AD_SCRI_5.CEL | OK | |||
| 15 | SM016 | 2907016 | Steptoe/Morex(BxH) | AD_SCRI_21.CEL | OK | |||
| 16 | SM020 | 2907020 | Steptoe/Morex(OxJ) | AD_SCRI_77.CEL | OK | |||
| 17 | SM021 | 2907021 | Morex/Steptoe(IxE) | AD_SCRI_30.CEL | OK | |||
| 18 | SM022 | 2907022 | Morex/Steptoe(IxE) | AD_SCRI_31.CEL | 0521-5_SetA5.CEL | SMmini | OK | OK |
| 19 | SM023 | 2907023 | Steptoe/Morex(BxH) | AD_SCRI_32.CEL | OK | |||
| 20 | SM024 | 2907024 | Morex/Steptoe(IxE) | AD_SCRI_33.CEL | 0521-6_SetA6.CEL | SMmini | OK | OK |
| 21 | SM025 | 2907025 | Morex/Steptoe(CxF) | AD_SCRI_34.CEL | OK | |||
| 22 | SM027 | 2907027 | Steptoe/Morex(OxJ) | AD_SCRI_12.CEL | 0521-7_SetA7.CEL | SMmini | OK | OK |
| 23 | SM030 | 2907030 | Morex/Steptoe(IxE) | AD_SCRI_79.CEL | OK | |||
| 24 | SM031 | 2907031 | Steptoe/Morex(OxJ) | AD_SCRI_16.CEL | OK | |||
| 25 | SM032 | 2907032 | Morex/Steptoe(IxE) | AD_SCRI_13.CEL | OK | |||
| 26 | SM035 | 2907035 | Morex/Steptoe(CxF) | AD_SCRI_15.CEL | ERROR | |||
| 27 | SM039 | 2907039 | Morex/Steptoe(CxF) | AD_SCRI_41.CEL | OK | |||
| 28 | SM040 | 2907040 | Steptoe/Morex(BxH) | AD_SCRI_83.CEL | OK | |||
| 29 | SM041 | 2907041 | Steptoe/Morex(OxJ) | AD_SCRI_11_redo.CEL | 0521-8_SetA8.CEL | SMmini | OK | OK |
| 30 | SM042 | 2907042 | Morex/Steptoe(CxF) | AD_SCRI_57.CEL | OK | |||
| 31 | SM043 | 2907043 | Morex/Steptoe(JxE) | AD_SCRI_49.CEL | 0521-9_SetA9.CEL | SMmini | OK | OK |
| 32 | SM044 | 2907044 | Steptoe/Morex(OxJ) | AD_SCRI_50.CEL | 0521-10_SetA10.CEL | SMmini | OK | OK |
| 33 | SM045 | 2907045 | Steptoe/Morex(BxH) | AD_SCRI_51.CEL | OK | |||
| 34 | SM046 | 2907046 | Steptoe/Morex(OxJ) | AD_SCRI_52.CEL | 0521-11_SetA11.CEL | SMmini | OK | OK |
| 35 | SM048 | 2907048 | Steptoe/Morex(BxF) | AD_SCRI_53.CEL | ERROR | |||
| 36 | SM050 | 2907050 | Morex/Steptoe(IxE) | AD_SCRI_46.CEL | OK | |||
| 37 | SM054 | 2907054 | Morex/Steptoe(CxF) | AD_SCRI_60.CEL | OK | |||
| 38 | SM055 | 2907055 | Steptoe/Morex(OxJ) | AD_SCRI_55.CEL | OK | |||
| 39 | SM056 | 2907056 | Steptoe/Morex(BxH) | AD_SCRI_23.CEL | OK | |||
| 40 | SM057 | 2907057 | Morex/Steptoe(CxF) | AD_SCRI_24.CEL | OK | |||
| 41 | SM058 | 2907058 | Steptoe/Morex(BxF) | AD_SCRI_22.CEL | OK | |||
| 42 | SM059 | 2907059 | Steptoe/Morex(BxH) | AD_SCRI_27.CEL | OK | |||
| 43 | SM061 | 2907061 | Morex/Steptoe(LxF) | AD_SCRI_81.CEL | 0521-12_SetA12.CEL | SMmini | OK | OK |
| 44 | SM062 | 2907062 | Morex/Steptoe(CxF) | AD_SCRI_44.CEL | OK | |||
| 45 | SM063 | 2907063 | Steptoe/Morex(OxJ) | AD_SCRI_40.CEL | 0521-13_SetA13.CEL | SMmini | OK | OK |
| 46 | SM064 | 2907064 | Morex/Steptoe(CxF) | AD_SCRI_87_redo.CEL | OK | |||
| 47 | SM065 | 2907065 | Morex/Steptoe(CxF) | AD_SCRI_54.CEL | OK | |||
| 48 | SM067 | 2907067 | Steptoe/Morex(OxJ) | AD_SCRI_73.CEL | OK | |||
| 49 | SM068 | 2907068 | Steptoe/Morex(OxG) | AD_SCRI_56.CEL | ERROR | |||
| 50 | SM069 | 2907069 | Steptoe/Morex(BxH) | AD_SCRI_71.CEL | OK | |||
| 51 | SM070 | 2907070 | Steptoe/Morex(BxF) | AD_SCRI_64.CEL | OK | |||
| 52 | SM071 | 2907071 | Steptoe/Morex(BxH) | AD_SCRI_58.CEL | OK | |||
| 53 | SM072 | 2907072 | Morex/Steptoe(CxF) | AD_SCRI_59.CEL | OK | |||
| 54 | SM073 | 2907073 | Steptoe/Morex(BxF) | AD_SCRI_74.CEL | 0521-14_SetA14.CEL | SMmini | OK | ERROR |
| 55 | SM074 | 2907074 | Morex/Steptoe(CxF) | AD_SCRI_25.CEL | 0521-15_SetA15.CEL | SMmini | OK | OK |
| 56 | SM075 | 2907075 | Steptoe/Morex(QxG) | AD_SCRI_120.CEL | OK | |||
| 57 | SM076 | 2907076 | Steptoe/Morex(BxF) | AD_SCRI_112.CEL | OK | |||
| 58 | SM077 | 2907077 | Morex/Steptoe(CxF) | AD_SCRI_142.CEL | OK | |||
| 59 | SM078 | 2907078 | Steptoe/Morex(BxF) | AD_SCRI_86.CEL | OK | |||
| 60 | SM079 | 2907079 | Morex/Steptoe(CxF) | AD_SCRI_153.CEL | 0521-16_SetA16.CEL | SMmini | OK | ERROR |
| 61 | SM080 | 2907080 | Steptoe/Morex(BxF) | AD_SCRI_107.CEL | OK | |||
| 62 | SM081 | 2907081 | Morex/Steptoe(CxF) | AD_SCRI_105.CEL | OK | |||
| 63 | SM082 | 2907082 | Steptoe/Morex(BxF) | AD_SCRI_97.CEL | OK | |||
| 64 | SM083 | 2907083 | Steptoe/Morex(BxF) | AD_SCRI_89.CEL | OK | |||
| 65 | SM084 | 2907084 | Morex/Steptoe(CxF) | AD_SCRI_155.CEL | OK | |||
| 66 | SM085 | 2907085 | Morex/Steptoe(IxE) | AD_SCRI_149.CEL | 0521-17_SetA17.CEL | SMmini | OK | OK |
| 67 | SM087 | 2907087 | Steptoe/Morex(OxJ) | AD_SCRI_113.CEL | OK | |||
| 68 | SM088 | 2907088 | Morex/Steptoe(CxF) | AD_SCRI_93.CEL | 0521-18_SetA18.CEL | SMmini | OK | OK |
| 69 | SM089 | 2907089 | Steptoe/Morex(OxJ) | AD_SCRI_148.CEL | 0521-19_SetA19.CEL | SMmini | OK | OK |
| 70 | SM091 | 2907091 | Morex/Steptoe(CxF) | AD_SCRI_110.CEL | OK | |||
| 71 | SM092 | 2907092 | Steptoe/Morex(OxJ) | AD_SCRI_7.CEL | OK | |||
| 72 | SM093 | 2907093 | Steptoe/Morex(BxF) | AD_SCRI_122.CEL | OK | |||
| 73 | SM094 | 2907094 | Morex/Steptoe(CxF) | AD_SCRI_150.CEL | OK | |||
| 74 | SM097 | 2907097 | Morex/Steptoe(CxF) | AD_SCRI_158.CEL | OK | |||
| 75 | SM098 | 2907098 | Morex/Steptoe(CxF) | AD_SCRI_121.CEL | OK | |||
| 76 | SM099 | 2907099 | Steptoe/Morex(QxG) | AD_SCRI_137.CEL | OK | |||
| 77 | SM103 | 2907103 | Morex/Steptoe(IxE) | AD_SCRI_156.CEL | OK | |||
| 78 | SM104 | 2907104 | Steptoe/Morex(BxH) | AD_SCRI_70.CEL | ERROR | |||
| 79 | SM105 | 2907105 | Morex/Steptoe(IxE) | AD_SCRI_69.CEL | OK | |||
| 80 | SM110 | 2907110 | Morex/Steptoe(CxF) | AD_SCRI_75.CEL | ERROR | |||
| 81 | SM112 | 2907112 | Steptoe/Morex(BxF) | AD_SCRI_84.CEL | OK | |||
| 82 | SM116 | 2907116 | Morex/Steptoe(CxF) | AD_SCRI_117.CEL | 0521-20_SetA20.CEL | SMmini | OK | OK |
| 83 | SM120 | 2907120 | Steptoe/Morex(OxJ) | AD_SCRI_138.CEL | OK | |||
| 84 | SM124 | 2907124 | Steptoe/Morex(BxF) | AD_SCRI_146.CEL | OK | |||
| 85 | SM125 | 2907125 | Morex/Steptoe(IxE) | AD_SCRI_43.CEL | OK | |||
| 86 | SM126 | 2907126 | Steptoe/Morex(OxJ) | AD_SCRI_144_redo.CEL | OK | |||
| 87 | SM127 | 2907127 | Steptoe/Morex(BxH) | AD_SCRI_129.CEL | OK | |||
| 88 | SM129 | 2907129 | Steptoe/Morex(OxJ) | AD_SCRI_132.CEL | OK | |||
| 89 | SM130 | 2907130 | Morex/Steptoe(CxF) | AD_SCRI_101.CEL | 0521-21_SetA21.CEL | SMmini | OK | OK |
| 90 | SM131 | 2907131 | Steptoe/Morex(OxJ) | AD_SCRI_102.CEL | OK | |||
| 91 | SM132 | 2907132 | Steptoe/Morex(QxG) | AD_SCRI_4_redo.CEL | OK | |||
| 92 | SM133 | 2907133 | Morex/Steptoe(CxF) | AD_SCRI_157.CEL | OK | |||
| 93 | SM134 | 2907134 | Morex/Steptoe(IxE) | AD_SCRI_159.CEL | OK | |||
| 94 | SM135 | 2907135 | Steptoe/Morex(BxF) | AD_SCRI_72.CEL | 0521-22_SetA22.CEL | SMmini | OK | OK |
| 95 | SM136 | 2907136 | Steptoe/Morex(QxG) | AD_SCRI_123.CEL | 0521-23_SetA23.CEL | SMmini | OK | OK |
| 96 | SM137 | 2907137 | Steptoe/Morex(BxH) | AD_SCRI_39.CEL | OK | |||
| 97 | SM139 | 2907139 | Morex/Steptoe(CxF) | AD_SCRI_133.CEL | OK | |||
| 98 | SM140 | 2907140 | Morex/Steptoe(CxF) | AD_SCRI_134.CEL | 0521-24_SetA24.CEL | SMmini | OK | OK |
| 99 | SM141 | 2907141 | Steptoe/Morex(BxH) | AD_SCRI_136.CEL | 0521-25_SetA25.CEL | SMmini | OK | OK |
| 100 | SM142 | 2907142 | Morex/Steptoe(IxE) | AD_SCRI_6.CEL | OK | |||
| 101 | SM143 | 2907143 | Steptoe/Morex(BxH) | AD_SCRI_145.CEL | OK | |||
| 102 | SM144 | 2907144 | Steptoe/Morex(BxF) | AD_SCRI_103.CEL | OK | |||
| 103 | SM145 | 2907145 | Steptoe/Morex(QxG) | AD_SCRI_108.CEL | OK | |||
| 104 | SM146 | 2907146 | Morex/Steptoe(BxF) | AD_SCRI_91.CEL | 0521-26_SetA26.CEL | SMmini | OK | OK |
| 105 | SM147 | 2907147 | Steptoe/Morex(OxJ) | AD_SCRI_139.CEL | OK | |||
| 106 | SM149 | 2907149 | Steptoe/Morex(BxF) | AD_SCRI_131.CEL | ERROR | |||
| 107 | SM150 | 2907150 | Morex/Steptoe(CxF) | AD_SCRI_37.CEL | OK | |||
| 108 | SM151 | 2907151 | Morex/Steptoe(IxE) | AD_SCRI_28.CEL | OK | |||
| 109 | SM152 | 2907152 | Steptoe/Morex(BxH) | AD_SCRI_9_redo.CEL | 0521-27_SetA27.CEL | SMmini | OK | OK |
| 110 | SM153 | 2907153 | Steptoe/Morex(BxH) | AD_SCRI_135.CEL | OK | |||
| 111 | SM154 | 2907154 | Steptoe/Morex(BxH) | AD_SCRI_114.CEL | OK | |||
| 112 | SM155 | 2907155 | Steptoe/Morex(BxH) | AD_SCRI_119.CEL | 0521-28_SetA28.CEL | SMmini | OK | OK |
| 113 | SM156 | 2907156 | Steptoe/Morex(BxH) | AD_SCRI_140.CEL | OK | |||
| 114 | SM157 | 2907157 | Morex/Steptoe(CxF) | AD_SCRI_106_redo.CEL | OK | |||
| 115 | SM158 | 2907158 | Morex/Steptoe(CxF) | AD_SCRI_65.CEL | OK | |||
| 116 | SM159 | 2907159 | Morex/Steptoe(IxE) | AD_SCRI_168.CEL | OK | |||
| 117 | SM160 | 2907160 | Steptoe/Morex(OxJ) | AD_SCRI_47.CEL | 0521-29_SetA29.CEL | SMmini | OK | ERROR |
| 118 | SM161 | 2907161 | Steptoe/Morex(BxH) | AD_SCRI_76.CEL | ERROR | |||
| 119 | SM162 | 2907162 | Morex/Steptoe(CxF) | AD_SCRI_147.CEL | OK | |||
| 120 | SM164 | 2907164 | Steptoe/Morex(OxJ) | AD_SCRI_128.CEL | OK | |||
| 121 | SM165 | 2907165 | Steptoe/Morex(BxH) | AD_SCRI_143.CEL | OK | OK | ||
| 122 | SM166 | 2907166 | Morex/Steptoe(CxF) | AD_SCRI_115.CEL | OK | |||
| 123 | SM167 | 2907167 | Steptoe/Morex(BxH) | AD_SCRI_127.CEL | 0521-30_SetA30.CEL | SMmini | OK | OK |
| 124 | SM168 | 2907168 | Steptoe/Morex(BxH) | AD_SCRI_130.CEL | OK | |||
| 125 | SM169 | 2907169 | Morex/Steptoe(CxF) | AD_SCRI_118.CEL | 0521-31_SetA31.CEL | SMmini | OK | OK |
| 126 | SM170 | 2907170 | Steptoe/Morex(BxF) | AD_SCRI_151.CEL | OK | |||
| 127 | SM171 | 2907171 | Steptoe/Morex(BxF) | AD_SCRI_165.CEL | ERROR | |||
| 128 | SM172 | 2907172 | Steptoe/Morex(OxJ) | AD_SCRI_152.CEL | ERROR | |||
| 129 | SM173 | 2907173 | Steptoe/Morex(OxJ) | AD_SCRI_104.CEL | 0521-32_SetA32.CEL | SMmini | OK | OK |
| 130 | SM174 | 2907174 | Steptoe/Morex(BxH) | AD_SCRI_154.CEL | OK | |||
| 131 | SM176 | 2907176 | Morex/Steptoe(CxF) | AD_SCRI_141.CEL | OK | |||
| 132 | SM177 | 2907177 | Morex/Steptoe(CxF) | AD_SCRI_111.CEL | 0521-33_SetA33.CEL | SMmini | OK | OK |
| 133 | SM179 | 2907179 | Morex/Steptoe(CxF) | AD_SCRI_166.CEL | OK | |||
| 134 | SM180 | 2907180 | Morex/Steptoe(IxE) | AD_SCRI_161.CEL | OK | |||
| 135 | SM181 | 2907181 | Morex/Steptoe(IxE) | AD_SCRI_162.CEL | OK | |||
| 136 | SM182 | 2907182 | Morex/Steptoe(CxF) | AD_SCRI_163.CEL | OK | |||
| 137 | SM183 | 2907183 | Morex/Steptoe(CxF) | AD_SCRI_164.CEL | OK | |||
| 138 | SM184 | 2907184 | Morex/Steptoe(IxE) | AD_SCRI_160.CEL | 0521-34_SetA34.CEL | SMmini | OK | OK |
| 139 | SM185 | 2907185 | Morex/Steptoe(IxE) | AD_SCRI_167.CEL | OK | |||
| 140 | SM186 | 2907186 | Morex/Steptoe(IxE) | AD_SCRI_62.CEL | OK | |||
| 141 | SM187 | 2907187 | Morex/Steptoe(IxE) | AD_SCRI_61.CEL | OK | |||
| 142 | SM188 | 2907188 | Morex/Steptoe(CxF) | AD_SCRI_63.CEL | OK | |||
| 143 | SM189 | 2907189 | Steptoe/Morex(QxG) | AD_SCRI_80.CEL | OK | |||
| 144 | SM193 | 2907193 | Morex/Steptoe(IxE) | AD_SCRI_36.CEL | OK | |||
| 145 | SM194 | 2907194 | Steptoe/Morex(OxJ) | AD_SCRI_29.CEL | OK | |||
| 146 | SM196 | 2907196 | Steptoe/Morex(BxF) | AD_SCRI_26.CEL | OK | |||
| 147 | SM197 | 2907197 | Steptoe/Morex(BxF) | AD_SCRI_85.CEL | OK | |||
| 148 | SM198 | 2907198 | Morex/Steptoe(IxE) | AD_SCRI_8.CEL | OK | |||
| 149 | SM199 | 2907199 | Steptoe/Morex(BxF) | AD_SCRI_20.CEL | OK | |||
| 150 | SM200 | 2907200 | Morex/Steptoe(IxE) | AD_SCRI_38.CEL | 0521-35_SetA35.CEL | SMmini | OK | OK |
| parent | Steptoe | AD_SCRI_17.CEL | 0521-36_SetA36.CEL | |||||
| parent | Steptoe | AD_SCRI_66.CEL | 0521-37_SetA37.CEL | |||||
| parent | Steptoe | AD_SCRI_68.CEL | 0521-38_SetA38.CEL | |||||
| parent | Morex | AD_SCRI_116.CEL | 0521-39_SetA39.CEL | |||||
| parent | Morex | AD_SCRI_14.CEL | 0521-40_SetA40.CEL | |||||
| parent | Morex | AD_SCRI_67.CEL | 0521-41_SetA41.CEL | |||||