From 11d55a97792c91ce4b961363db9d852ee6031262 Mon Sep 17 00:00:00 2001 From: Pjotr Prins Date: Wed, 17 Nov 2021 06:29:25 -0600 Subject: generate screen shots --- .../starting-from-known-gene.md | 27 +++++++--------------- 1 file changed, 8 insertions(+), 19 deletions(-) (limited to 'story-boards/starting-from-known-gene/starting-from-known-gene.md') diff --git a/story-boards/starting-from-known-gene/starting-from-known-gene.md b/story-boards/starting-from-known-gene/starting-from-known-gene.md index 38de598..3eaaafd 100644 --- a/story-boards/starting-from-known-gene/starting-from-known-gene.md +++ b/story-boards/starting-from-known-gene/starting-from-known-gene.md @@ -2,41 +2,30 @@ GeneNetwork contains data on thousands of experiments. How do you mine GN when you have the name of a gene? Start with [BRCA2](https://genenetwork.org/genes/BRCA2). -# Table of contents -1. [Global search](#gsearch) -1. [Gene aliases](#alias) -1. [Genewiki](#genewiki) -1. [TODO](#TODO) +## Use the search page -## Use the search page +The top bar of GeneNetwork shows a global search: -The top bar of GeneNetwork shows a global search. +[![Home page](./global-search.png "Global search")](https://genenetwork.org/) -![Home page](./genenetwork.png "The GeneNetwork HOME") - -We can look for the `Brca2` mouse gene: - -

- Global gene search -

+We can look for the `Brca2` mouse gene, resulting in +[![Global search](./global-search-gene.png "Global search gene")]() ## Find the right alias/name GeneNetwork knows about aliases. But sometimes you want to check what aliases there are in mouse. If you search for BRCA2 and click on a search result, for example for [1448542_at](http://genenetwork.org/show_trait?trait_id=1448542_at&dataset=HC_M2_0606_P), you get to the 'trait page' which shows the aliases: -

- Gene aliases -

+[![Gene aliases](./gene-aliases.png "Gene aliase")](https://genenetwork.org/show_trait?trait_id=1448542_at&dataset=HC_M2_0606_P) GeneNetwork ignores case by default. In a search use quotes to search case sensitive. For example, [BRCA2](https://www.wikidata.org/wiki/Q17853272) on wikidata.org refers to the human gene. The mouse gene is named [Brca2](https://www.wikidata.org/wiki/Q14864738). -## Find the GeneNetwork genewiki entry +## Find the GeneNetwork genewiki entry GeneNetwork maintains info on gene entries. For example for [BRCA2](http://gn1.genenetwork.org/webqtl/main.py?FormID=geneWiki&symbol=BRCA2). -## TODO +## TODO * [ ] expand story line * [ ] global search is faulty, see gn-gemtext-threads/issues/genenetwork/global-search.gmi -- cgit v1.2.3