From 4d494d24f066ed1980f18796ac836bca2ad7b030 Mon Sep 17 00:00:00 2001
From: Munyoki Kilyungi
Date: Fri, 21 Jul 2023 16:32:01 +0300
Subject: Update auto-generated docs

---
 rdf-documentation/dump-probeset.md | 62 --------------------------------------
 1 file changed, 62 deletions(-)
 delete mode 100644 rdf-documentation/dump-probeset.md

(limited to 'rdf-documentation/dump-probeset.md')

diff --git a/rdf-documentation/dump-probeset.md b/rdf-documentation/dump-probeset.md
deleted file mode 100644
index 5b4de63..0000000
--- a/rdf-documentation/dump-probeset.md
+++ /dev/null
@@ -1,62 +0,0 @@
-# ProbeSet Metadata
-## 'dump-probeset'
-
-## Schema Triples:
-
-```text
-gn-term:name -> rdfs:range -> rdfs:Literal
-gn-term:probeset -> rdfs:range -> rdfs:Literal
-```
-## Generated Triples:
-
-The following SQL query was executed:
-
-```sql
-SELECT IFNULL(NULLIF(TRIM(ProbeSet.Name), ''), ProbeSet.Id) AS name, GeneChip.Name, ProbeSet.Name, ProbeSet.Symbol, ProbeSet.description, ProbeSet.Chr, IFNULL(ProbeSet.Mb, '') AS Mb, ProbeSet.BlatSeq, ProbeSet.TargetSeq, ProbeSet.UniProtID FROM ProbeSet LEFT JOIN GeneChip ON GeneChip.Id = ProbeSet.ChipId
-```
-
-The above query results to triples that have the form:
-
-```text
-probeset:name -> rdf:type -> gn-id:probeset 
-probeset:name -> gn-term:chipOf -> gn-id:platform_genechip_name 
-probeset:name -> gn-term:name -> ProbeSet(Name) 
-probeset:name -> gn-term:symbol -> ProbeSet(Symbol) 
-probeset:name -> gn-term:description -> ProbeSetdescription 
-probeset:name -> gn-term:chr -> ProbeSet(Chr) 
-probeset:name -> gn-term:mb -> "Mb"^^xsd:double 
-probeset:name -> gn-term:blatSeq -> ProbeSetBlatSeq 
-probeset:name -> gn-term:targetSeq -> ProbeSetTargetSeq 
-probeset:name -> gn-term:uniProtReference -> uniprot:ProbeSet(UniProtID) 
-```
-Here's an example query:
-
-```sparql
-@prefix probeset: <http://genenetwork.org/probeset/> .
-@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
-@prefix rdfs: <http://www.w3.org/2000/01/rdf-r .
-@prefix uniprot: <http://purl.uniprot.org/uniprot/> .
-
-SELECT ?s ?p ?o WHERE { 
-    ?s rdf:type gn-id:probeset .
-    ?s gn-term:chipOf gn-id:platform_mg_u74av2 .
-    ?s gn-term:name "MG_U74AV2" .
-    ?s gn-term:symbol "Cd3g" .
-    ?s ?p ?o .
-}
-```
-
-Expected Result:
-
-```rdf
-probeset:100001_at rdf:type gn-id:probeset .
-probeset:100001_at gn-term:chipOf gn-id:platform_mg_u74av2 .
-probeset:100001_at gn-term:name "MG_U74AV2" .
-probeset:100001_at gn-term:symbol "Cd3g" .
-probeset:100001_at gn-term:description "CD3d antigen, gamma polypeptide" .
-probeset:100001_at gn-term:chr "9" .
-probeset:100001_at gn-term:mb "44.970689"^^xsd:double .
-probeset:100001_at gn-term:blatSeq "CTCTGTTGCAAAATGAACAGCTGTACAGCCCCTCAAGGACCGGGAATATGACCAGTACAGCCATCTCCAAGGAAACCAACTGAGGAAGAAGTGAACTCAGCAGGACTCAGGGTGTCCCCACAATGCATTTTGGAGAGAGCCCAGACTGCAAGCAGAGAGGAAGAACTGAGGAAAACAAGCACAGCGTGGTGTT" .
-probeset:100001_at gn-term:targetSeq "ctctgttgcaaaatgaacagctgtaccagcccctcaaggaccgggaatatgaccagtacagccatctccaaggaaaccaactgaggaagaagtgaactcagcaggactcagggtgtccccccttntatccagcacccagaatcaaaacaatgcattttggagagagcccagtagagagattttcaaccctacaggtagactgcaagcagagaggaagaactgtcaaagaaattttggtcttttttttttttttnncaaaataaaataaaagcttggaggagccagtggtatgantnnnnnntgnancanttgtcaaccttgtttggggttnncagcaccccacccccagaccccccaaaaaaattcagtgaaggaaaacaagcacagcgtggtgtt" .
-```
-
-- 
cgit v1.2.3