From edca04399ae950698a89a64160cd35f6164f4b1c Mon Sep 17 00:00:00 2001
From: Munyoki Kilyungi
Date: Thu, 24 Aug 2023 13:08:59 +0300
Subject: Update autogenerated docs

Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
---
 rdf-documentation/dump-probeset-metadata.md | 58 -----------------------------
 1 file changed, 58 deletions(-)
 delete mode 100644 rdf-documentation/dump-probeset-metadata.md

(limited to 'rdf-documentation/dump-probeset-metadata.md')

diff --git a/rdf-documentation/dump-probeset-metadata.md b/rdf-documentation/dump-probeset-metadata.md
deleted file mode 100644
index 37aa2c5..0000000
--- a/rdf-documentation/dump-probeset-metadata.md
+++ /dev/null
@@ -1,58 +0,0 @@
-# Probeset Metadata
-## 'dump-probeset-metadata'
-
-## Generated Triples:
-
-The following SQL query was executed:
-
-```sql
-SELECT ProbeSetFreeze.Name, IFNULL(ProbeSet.Name, ProbeSet.Id) AS name, ProbeSetFreeze.Name, IFNULL(ProbeSetXRef.mean, '') AS mean, IFNULL(ProbeSetXRef.se, '') AS se, ProbeSetXRef.Locus, IFNULL(ProbeSetXRef.LRS, '') AS LRS, IFNULL(ProbeSetXRef.pValue, '') AS pValue, IFNULL(ProbeSetXRef.additive, '') AS additive, IFNULL(ProbeSetXRef.h2, '') AS h2 FROM ProbeSetXRef LEFT JOIN ProbeSet ON ProbeSetXRef.ProbeSetId = ProbeSet.Id LEFT JOIN ProbeSetFreeze ON ProbeSetXRef.ProbeSetFreezeId = ProbeSetFreeze.Id WHERE ProbeSetFreeze.public > 0 AND ProbeSetFreeze.confidentiality < 1
-```
-
-The above query results to triples that have the form:
-
-```text
-gn:Probesetfreeze_name_ -> rdf:type -> gnc:probesetData 
-gn:Probesetfreeze_name_ -> gnt:hasProbeset -> probeset:name 
-gn:Probesetfreeze_name_ -> gnt:probesetOfDataset -> probeset:ProbeSetFreeze_Name_ 
-gn:Probesetfreeze_name_ -> gnt:mean -> "mean"^^xsd:double 
-gn:Probesetfreeze_name_ -> gnt:se -> "se"^^xsd:double 
-gn:Probesetfreeze_name_ -> gnt:locus -> ProbeSetXRef(Locus) 
-gn:Probesetfreeze_name_ -> gn:LRS -> "LRS"^^xsd:double 
-gn:Probesetfreeze_name_ -> gnt:pValue -> "pValue"^^xsd:double 
-gn:Probesetfreeze_name_ -> gnt:additive -> "additive"^^xsd:double 
-gn:Probesetfreeze_name_ -> gnt:h2 -> "h2"^^xsd:float 
-```
-Here's an example query:
-
-```sparql
-PREFIX gn: <http://genenetwork.org/id/> 
-PREFIX gnc: <http://genenetwork.org/category/> 
-PREFIX gnt: <http://genenetwork.org/id/> 
-PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> 
-PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> 
-PREFIX xsd: <http://www.w3.org/2001/XMLSchema#> 
-
-SELECT * WHERE { 
-    ?s rdf:type gnc:probesetData .
-    ?s gnt:hasProbeset probeset:100001_at .
-    ?s gnt:probesetOfDataset probeset:HC_U_0304_R .
-    ?s gnt:mean #{"8.14033666666667"^^xsd:double}# .
-    ?s ?p ?o .
-}
-```
-
-Expected Result:
-
-```rdf
-gn:Hc_u_0304_r rdf:type gnc:probesetData .
-gn:Hc_u_0304_r gnt:hasProbeset probeset:100001_at .
-gn:Hc_u_0304_r gnt:probesetOfDataset probeset:HC_U_0304_R .
-gn:Hc_u_0304_r gnt:mean "8.14033666666667"^^xsd:double .
-gn:Hc_u_0304_r gnt:se "0.023595817125580502"^^xsd:double .
-gn:Hc_u_0304_r gnt:locus "rsm10000021399" .
-gn:Hc_u_0304_r gn:LRS "12.2805314427567"^^xsd:double .
-gn:Hc_u_0304_r gnt:pValue "0.118"^^xsd:double .
-gn:Hc_u_0304_r gnt:additive "0.0803547619047631"^^xsd:double .
-```
-
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