From b2feda451ccfbeaed02dce9088d6dd228cf15861 Mon Sep 17 00:00:00 2001
From: Bonface
Date: Tue, 13 Feb 2024 23:52:26 -0600
Subject: Update dataset RTF Files.

---
 general/datasets/Ucla_bxd_liv_jan16/citation.rtf          | 3 +++
 general/datasets/Ucla_bxd_liv_jan16/contributors.rtf      | 1 +
 general/datasets/Ucla_bxd_liv_jan16/experiment-design.rtf | 1 +
 general/datasets/Ucla_bxd_liv_jan16/platform.rtf          | 1 +
 general/datasets/Ucla_bxd_liv_jan16/summary.rtf           | 1 +
 5 files changed, 7 insertions(+)
 create mode 100644 general/datasets/Ucla_bxd_liv_jan16/citation.rtf
 create mode 100644 general/datasets/Ucla_bxd_liv_jan16/contributors.rtf
 create mode 100644 general/datasets/Ucla_bxd_liv_jan16/experiment-design.rtf
 create mode 100644 general/datasets/Ucla_bxd_liv_jan16/platform.rtf
 create mode 100644 general/datasets/Ucla_bxd_liv_jan16/summary.rtf

(limited to 'general/datasets/Ucla_bxd_liv_jan16')

diff --git a/general/datasets/Ucla_bxd_liv_jan16/citation.rtf b/general/datasets/Ucla_bxd_liv_jan16/citation.rtf
new file mode 100644
index 0000000..6d383f0
--- /dev/null
+++ b/general/datasets/Ucla_bxd_liv_jan16/citation.rtf
@@ -0,0 +1,3 @@
+<ul>
+	<li>Bennett BJ, Davis RC, Civelek M, Orozco L et al.&nbsp;Genetic Architecture of Atherosclerosis in Mice: A Systems Genetics Analysis of Common Inbred Strains.&nbsp;PLoS Genet&nbsp;2015 Dec 22;11(12):e1005711. PMID:&nbsp;<a href="https://www.ncbi.nlm.nih.gov/pubmed/26694027" title="Link to PubMed record">26694027</a></li>
+</ul>
diff --git a/general/datasets/Ucla_bxd_liv_jan16/contributors.rtf b/general/datasets/Ucla_bxd_liv_jan16/contributors.rtf
new file mode 100644
index 0000000..8450813
--- /dev/null
+++ b/general/datasets/Ucla_bxd_liv_jan16/contributors.rtf
@@ -0,0 +1 @@
+<p><a href="https://www.ncbi.nlm.nih.gov/pubmed/?term=Lusis%20AJ[Author]">Lusis AJ</a>,&nbsp;<a href="https://www.ncbi.nlm.nih.gov/pubmed/?term=Bennett%20B[Author]">Bennett B</a>,&nbsp;<a href="https://www.ncbi.nlm.nih.gov/pubmed/?term=Davis%20R[Author]">Davis R</a></p>
diff --git a/general/datasets/Ucla_bxd_liv_jan16/experiment-design.rtf b/general/datasets/Ucla_bxd_liv_jan16/experiment-design.rtf
new file mode 100644
index 0000000..715a1a3
--- /dev/null
+++ b/general/datasets/Ucla_bxd_liv_jan16/experiment-design.rtf
@@ -0,0 +1 @@
+<p>GWAS for expression in livers of F1 offspring of inbred strains crossed with C57BL/6J carrying ApoE-Leiden and CETP transgenes fed chow diet for 8 weeks followed by Western diet for 16 weeks</p>
diff --git a/general/datasets/Ucla_bxd_liv_jan16/platform.rtf b/general/datasets/Ucla_bxd_liv_jan16/platform.rtf
new file mode 100644
index 0000000..7659aeb
--- /dev/null
+++ b/general/datasets/Ucla_bxd_liv_jan16/platform.rtf
@@ -0,0 +1 @@
+<p><a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL11180">GPL11180</a>&nbsp;HT_MG-430_PM] Affymetrix HT MG-430 PM Array Plate</p>
diff --git a/general/datasets/Ucla_bxd_liv_jan16/summary.rtf b/general/datasets/Ucla_bxd_liv_jan16/summary.rtf
new file mode 100644
index 0000000..9ffc1be
--- /dev/null
+++ b/general/datasets/Ucla_bxd_liv_jan16/summary.rtf
@@ -0,0 +1 @@
+<p>Identify genes in the liver whose expression is under genetic regulation in the Hybrid Mouse Diversity Panel (HMDP). The HMDP comprises classical inbred and recombinant inbred wild type mice. 104 of these strains were bred onto a C57BL/6J background carrying transgenes for both ApoE-Leiden and cholesteryl ester transfer protein (CETP). The RMA values of genes were used for genome wide association as described in Davis et al PLOS Genetics 2015. These data are used to identify candidate genes at loci associated with atherosclerotic lesion size.</p>
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