From d029d5d7f8ead1f1de8d318045004a4a6f68f5fb Mon Sep 17 00:00:00 2001 From: Bonface Date: Fri, 9 Feb 2024 09:41:28 -0600 Subject: Update dataset RTF Files. --- .../UTHSC_ILM_BXD_hipp_RSEb_0217/notes.rtf | 23 ++++++++++++++++++++++ 1 file changed, 23 insertions(+) create mode 100644 general/datasets/UTHSC_ILM_BXD_hipp_RSEb_0217/notes.rtf (limited to 'general/datasets/UTHSC_ILM_BXD_hipp_RSEb_0217/notes.rtf') diff --git a/general/datasets/UTHSC_ILM_BXD_hipp_RSEb_0217/notes.rtf b/general/datasets/UTHSC_ILM_BXD_hipp_RSEb_0217/notes.rtf new file mode 100644 index 0000000..35247b6 --- /dev/null +++ b/general/datasets/UTHSC_ILM_BXD_hipp_RSEb_0217/notes.rtf @@ -0,0 +1,23 @@ +

Hippocampus 5 Conditions
+Illumina Rank Invariant Normalized; Log2 Transformed and Z-Scored
+Batch and Outlier Analysis on Partek Genomic Suite 6.6
+ANOVA Done with batch (BATCH 1 AND 2); Batch effect removed
+K MOZHUI (KMOZHUI@UTHSC.EDU) 12-Nov-12
+Outliers removed are: 4060001003_A, 4060001010_D, 4060001012_A, 4060001012_C, 4060001012_E, AND 4060001078_A
+Number of samples = 284
+Number of probes = 46643

+ +
    +
  1. UTHSC Hippocampus Illumina v6.1 5Trt (Nov12) RankInv LRS=(46 999)-> 1331
    + ProbeSetID:ILM3440048 Gene:Cdkl2 Max LRS=192
    2. +
  2. UTHSC Hippocampus Illumina v6.1 NON (Nov12) RankInv LRS=(46 999)-> 219
    + ProbeSetID:ILM6350725 Gene:C14orf119 Max LRS=97.8
    3. +
  3. UTHSC Hippocampus Illumina v6.1 NOS (Nov12) RankInv LRS=(46 999)-> 404
    + ProbeSetID:ILM3440048 Gene:Cdkl2 Max LRS=106.6
    4. +
  4. UTHSC Hippocampus Illumina v6.1 NOE (Nov12) RankInv LRS=(46 999)-> 509
    + ProbeSetID:ILM5270066 Gene:MGC67181 Max LRS=151
    5. +
  5. UTHSC Hippocampus Illumina v6.1 RSS (Nov12) RankInv LRS=(46 999)-> 415
    + ProbeSetID:ILM5720687 Gene:Abhd16a Max LRS=121.7
    6. +
  6. UTHSC Hippocampus Illumina v6.1 RSE (Nov12) RankInv LRS=(46 999)-> 421
    + ProbeSetID:ILM6350725 Gene:C14orf119 Max LRS=144.1
    7. +
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