From d029d5d7f8ead1f1de8d318045004a4a6f68f5fb Mon Sep 17 00:00:00 2001 From: Bonface Date: Fri, 9 Feb 2024 09:41:28 -0600 Subject: Update dataset RTF Files. --- general/datasets/UTHSC_GutGL_0414/cases.rtf | 1696 ++++++++++++++++++++++ general/datasets/UTHSC_GutGL_0414/platform.rtf | 1 + general/datasets/UTHSC_GutGL_0414/processing.rtf | 1 + general/datasets/UTHSC_GutGL_0414/specifics.rtf | 1 + general/datasets/UTHSC_GutGL_0414/tissue.rtf | 1 + 5 files changed, 1700 insertions(+) create mode 100644 general/datasets/UTHSC_GutGL_0414/cases.rtf create mode 100644 general/datasets/UTHSC_GutGL_0414/platform.rtf create mode 100644 general/datasets/UTHSC_GutGL_0414/processing.rtf create mode 100644 general/datasets/UTHSC_GutGL_0414/specifics.rtf create mode 100644 general/datasets/UTHSC_GutGL_0414/tissue.rtf (limited to 'general/datasets/UTHSC_GutGL_0414') diff --git a/general/datasets/UTHSC_GutGL_0414/cases.rtf b/general/datasets/UTHSC_GutGL_0414/cases.rtf new file mode 100644 index 0000000..e3e9e26 --- /dev/null +++ b/general/datasets/UTHSC_GutGL_0414/cases.rtf @@ -0,0 +1,1696 @@ +
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IndexCaseIDStrainSexCoat ColorDate of BirthGenerationSacrifice DateAgeRNA
+ conc.(ug/ul)		RNA Purity
+ 260/280		RNA Integrity Number RINRun ChipNotes
1081910.14B6D2F1Mblack06/10/2010 08/18/2010690.52.008.40y 
2081910.17B6D2F1Mblack06/10/2010 08/18/2010690.92.008.60  
3081910.18B6D2F1Fblack06/10/2010 08/18/2010690.31.809.30y 
4081910.09D2B6F1Fblack06/02/2010 08/18/2010770.72.009.00y 
5081910.23D2B6F1Mblack06/02/2010 08/18/20107710.22.028.50y 
6081910.12C57BL/6JFblack06/02/2010 08/18/2010770.61.90n/ay 
7081910.25C57BL/6JMblack06/02/2010 08/18/2010773.42.03 y 
8081910.39C57BL/6JFblack06/02/2010 08/18/2010772.301.998.50y 
9081910.41C57BL/6JMblack06/18/2010 08/18/2010612.202.028.60y 
10081910.29DBA/2JFdilute brown DBA06/02/2010 08/18/2010772.92.038.50yneed one more female
11081910.31DBA/2JMdilute brown DBA06/11/2010 08/18/2010688.62.068.00y 
12081910.43DBA/2JMdilute brown DBA05/06/2010 08/18/20101042.302.019.30y 
13081810.08BXD1Mdilute brown DBA05/24/201014208/17/2010850.61.928.50y 
14081810.13BXD1Fdilute brown DBA06/07/201013908/17/2010710.7 9.00y 
15081710.91BXD11Mblack06/02/201013708/17/2010760.71.938.20y 
16081710.97BXD11Fblack05/22/201013608/17/2010871.01.958.90y 
17081810.23BXD12Mgray06/01/201012208/17/2010770.92.008.00y 
18081810.44BXD12Fgray06/01/201012208/18/2010780.81.938.30y 
19081810.33BXD14Fblack05/29/201014208/17/2010801.21.978.10y 
20081810.52BXD14Mblack05/29/201014208/18/2010810.41.909.00y 
21081810.19BXD24Fbrown05/24/20109008/17/2010850.31.909.10yThis strain comes from UTHSC colony since 2008. So they are probably blind.
22081810.42BXD24Mbrown05/24/20109008/17/2010850.72.008.50yThis strain comes from UTHSC colony since 2008. So they are probably blind.
23081710.99BXD27Mdilute brown DBA06/05/201016208/17/2010731.31.958.40yneed one more female
24081810.04BXD29Mgray06/07/20102508/17/2010710.51.918.40y 
25081810.10BXD29Fgray06/07/20102508/17/2010710.61.978.70y 
26081810.18BXD31Mblack06/05/201013008/17/2010730.51.888.70y 
27081810.40BXD31Fblack06/05/201013008/17/2010731.12.007.00y 
28081610.76BXD32Fblack05/29/201011608/18/2010813.82.059.10yneed one more male
29081810.26BXD34Mblack06/02/20106308/17/2010761.31.988.20y 
30081810.29BXD34Mblack06/02/20106308/17/2010760.71.938.50  
31081810.46BXD34Fblack06/02/20106308/18/2010771.02.007.10y 
32081810.36BXD39Mgray05/31/20106808/17/2010780.61.948.20y 
33081810.55BXD39Fgray05/31/20106808/18/2010790.81.968.40y 
34081910.03BXD40Fgray05/25/20105808/18/2010851.22.008.80y 
35081910.06BXD40Mgray05/25/20105808/18/2010850.71.908.80y 
36081810.31BXD42Fblack05/23/20106408/17/2010860.91.958.30y 
37081810.48BXD42Mblack05/23/20106408/18/2010870.81.938.90y 
38081710.47BXD43Mblack05/28/20104408/17/2010811.21.958.10y 
39081710.48BXD43Fblack05/28/20104408/17/2010811.71.968.90y 
40081710.49BXD43Fblack05/28/20104408/17/2010811.21.958.50  
41081710.23BXD44Fbrown05/26/20104108/17/2010831.11.968.30y 
42081710.24BXD44Fbrown05/26/20104108/17/2010830.91.928.70  
43081710.30BXD44Mdilute brown DBA05/26/20104108/17/2010831.31.978.20y 
44081710.31BXD44Mdilute brown DBA05/26/20104108/17/2010831.61.988.30  
45081710.32BXD44Mdilute brown DBA05/26/20104108/17/2010830.81.958.80  
46081710.51BXD45Mdilute brown DBA06/01/20103908/17/2010771.21.947.80y 
47081710.54BXD45Fdilute brown DBA06/01/20103908/17/2010771.01.947.30y 
48081610.14BXD48Fblack06/03/20104008/18/2010762.22.019.50y 
49081610.17BXD48Mblack06/03/20104008/18/2010763.32.058.20y 
50081710.29BXD49Mgray05/25/20104908/17/2010841.61.977.10y 
51081710.34BXD49Fgray05/25/20102408/17/2010841.01.958.50y 
52081610.29BXD50Fblack06/02/20103508/18/2010773.32.058.40y 
53081610.32BXD50Mblack06/02/20103508/18/2010779.12.038.40y 
54081610.36BXD56Mblack06/02/20103408/18/2010771.92.029.60y 
55081610.77BXD56Fblack05/26/20103408/18/2010843.42.058.20y 
56081610.80BXD56Fblack05/26/20103308/18/2010843.22.058.50  
57081710.67BXD60Mbrown06/08/20104308/17/2010700.91.918.40yneed one more female
58081810.83BXD62Mbrown05/27/20104108/18/2010830.51.958.10yneed one more female
59081610.22BXD63Mdilute brown DBA06/02/20103108/18/2010776.92.078.50y 
60081610.25BXD63Fdilute brown DBA06/02/20103108/18/2010772.22.008.70y 
61081610.03BXD65Mbrown05/26/20103208/18/20108411.22.038.70y 
62081610.11BXD65Fbrown05/26/20103208/18/2010843.12.039.10y 
63081610.96BXD68Fbrown06/03/20103308/18/2010764.02.038.20y 
64081610.99BXD68Mbrown06/03/20103308/18/2010763.42.097.80y 
65081710.71BXD69Mdilute brown DBA05/29/20104108/17/2010801.31.967.90y 
66081710.78BXD69Fdilute brown DBA06/09/20104208/17/2010690.81.908.50y 
67081610.85BXD70Mdilute brown DBA06/03/20103608/18/2010764.61.999.40y 
68081610.92BXD70Fdilute brown DBA06/03/20103608/18/2010763.12.078.50y 
69081910.33BXD71Fdilute brown DBA06/03/20103508/18/2010762.82.058.00y 
70081910.38BXD71Mdilute brown DBA06/03/20103508/18/2010764.62.028.30y 
71081710.81BXD73Fdilute brown DBA05/26/20104408/17/2010830.81.908.60y 
72081710.83BXD73Mdilute brown DBA05/26/20104108/17/2010830.81.918.40y 
73081810.58BXD75Mdilute brown DBA06/03/20103908/18/2010760.81.958.70y 
74081810.73BXD75Fdilute brown DBA06/03/20103908/18/2010760.71.929.30y 
75081710.06BXD79Fgray05/23/20102408/18/2010872.92.048.60y 
76081710.08BXD79Mgray05/23/20102408/18/2010872.12.019.40y 
77081710.87BXD80Fdilute brown DBA06/05/20103308/17/2010731.21.958.20y 
78081710.88BXD80Mdilute brown DBA06/05/20103308/17/2010730.81.918.00y 
79081610.64BXD83Mdilute brown DBA05/29/20103208/18/2010812.52.048.50y 
80081610.69BXD83Fdilute brown DBA05/29/20103208/18/2010812.72.058.20y 
81081810.80BXD84Fdilute brown DBA06/03/20103108/18/2010760.91.968.80yneed one more male
82081710.10BXD85Fdilute brown DBA06/05/20104008/18/2010743.72.047.90y 
83081710.13BXD85Mdilute brown DBA06/05/20104008/18/2010742.92.068.40y 
84081610.60BXD87Mblack05/27/20103508/18/2010833.42.048.30y 
85081610.63BXD87Fblack05/27/20103508/18/2010833.12.058.40y 
86081610.40BXD89Mdilute brown DBA05/28/20103608/18/2010822.62.058.50yneed one more female
87081610.53BXD90Fdilute brown DBA05/28/20103908/18/2010829.12.068.60y 
88081610.57BXD90Mdilute brown DBA05/28/20103908/18/2010822.12.029.40y 
89081610.87BXD92AFbrown05/24/20104208/18/2010862.62.058.60y 
90081610.93BXD92AMbrown05/21/20104208/18/2010898.52.078.80y 
91081910.32BXD95Mdilute brown DBA06/03/20102508/18/2010762.72.059.20y 
92081610.81BXD95Fdilute brown DBA06/03/20102508/18/2010763.22.078.70y 
93081610.84BXD95Mdilute brown DBA06/03/20102508/18/20107613.31.977.70  
94081610.47BXD97Fbrown06/08/20103508/18/2010712.32.009.10yneed one more male
95081610.06BXD99Fdilute brown DBA06/02/20102808/18/2010774.22.019.00y 
96081610.20BXD99Mdilute brown DBA06/02/20102808/18/2010772.22.008.90y 
97081810.63BXD100Mblack05/27/20103008/18/2010830.71.908.60y 
98081810.75BXD100Fblack05/27/20103008/18/2010830.91.958.10y 
99081710.14BXD101Mgray05/21/20102708/18/2010892.92.058.90y 
100081710.19BXD101Fgray05/21/20102708/18/2010893.22.068.30y 
101081710.41BXD102Fbrown05/21/20102508/17/2010881.51.957.70y 
102081710.45BXD102Mbrown05/21/20102508/17/2010881.21.977.70y 
103081710.58BXD103Mdilute brown DBA05/31/20102108/17/2010781.11.948.40y 
104081710.62BXD103Fdilute brown DBA05/31/20102108/17/2010780.61.918.40y 
+
+
diff --git a/general/datasets/UTHSC_GutGL_0414/platform.rtf b/general/datasets/UTHSC_GutGL_0414/platform.rtf new file mode 100644 index 0000000..79244c6 --- /dev/null +++ b/general/datasets/UTHSC_GutGL_0414/platform.rtf @@ -0,0 +1 @@ +

[MoGene-1_0-st] Affymetrix Mouse Gene 1.0 ST Array [transcript (gene) version]

diff --git a/general/datasets/UTHSC_GutGL_0414/processing.rtf b/general/datasets/UTHSC_GutGL_0414/processing.rtf new file mode 100644 index 0000000..ebfa292 --- /dev/null +++ b/general/datasets/UTHSC_GutGL_0414/processing.rtf @@ -0,0 +1 @@ +

This dataset includes Gene and Exon level RMA normalization.

diff --git a/general/datasets/UTHSC_GutGL_0414/specifics.rtf b/general/datasets/UTHSC_GutGL_0414/specifics.rtf new file mode 100644 index 0000000..d877bcf --- /dev/null +++ b/general/datasets/UTHSC_GutGL_0414/specifics.rtf @@ -0,0 +1 @@ +

Gene Level

diff --git a/general/datasets/UTHSC_GutGL_0414/tissue.rtf b/general/datasets/UTHSC_GutGL_0414/tissue.rtf new file mode 100644 index 0000000..5653e30 --- /dev/null +++ b/general/datasets/UTHSC_GutGL_0414/tissue.rtf @@ -0,0 +1 @@ +

Approximately two equal-sized segments of the small intestine were pooled per animal: one taken from the proximal jejunum and one from the distal ileum. We did generate a second data set (not in GeneNetwork) for different segments of the the GI tract from stomach to distal colon for C57BL/6J and DBA/2J parental strains. These additional data are available upon request from Drs. Dennis Black and Lu Lu.

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