From d029d5d7f8ead1f1de8d318045004a4a6f68f5fb Mon Sep 17 00:00:00 2001 From: Bonface Date: Fri, 9 Feb 2024 09:41:28 -0600 Subject: Update dataset RTF Files. --- .../datasets/UTHSC_BXD_WB_RNASeqtrim1112/notes.rtf | 23 ++++++++++++++++++++++ 1 file changed, 23 insertions(+) create mode 100644 general/datasets/UTHSC_BXD_WB_RNASeqtrim1112/notes.rtf (limited to 'general/datasets/UTHSC_BXD_WB_RNASeqtrim1112/notes.rtf') diff --git a/general/datasets/UTHSC_BXD_WB_RNASeqtrim1112/notes.rtf b/general/datasets/UTHSC_BXD_WB_RNASeqtrim1112/notes.rtf new file mode 100644 index 0000000..c16bd50 --- /dev/null +++ b/general/datasets/UTHSC_BXD_WB_RNASeqtrim1112/notes.rtf @@ -0,0 +1,23 @@ +

RNA sequencing for BXD strains on SOLiD by David Li.
+All Bam files alignment done by Xusheng Wang
+Aligned files were uploaded to Partek Genomic Suite 6.5 (version 6.10.0810) and processed by K Mozhui
+Normalization: RPKM (reads per kilobase per million mapped reads)
+Batch effect due to low exonic reads for batch 2

+ +

Revision 1.6 Untrimmed (current) LRS=(23 999) ->350 records
+Max LRS = 102.6 Record Id:uthsc_nr_015498, Gene Symbol:1500004A13Rik **Note: 1 sample BXD45 and BXD34 removed. BXD41 switched to BXD1 as a second posible candidate.

+ +

Revision 1.5 Untrimmed LRS=(23 999) ->268 records
+Max LRS = 80.0 Record Id:uthsc_nm_001039533, Gene Symbol:Pdxdc1 **Note: 1 sample BXD45 removed. BXD41 switched to BXD1 as a second posible candidate.

+ +

Revision 1.4 Untrimmed LRS=(23 999) ->246 records
+Max LRS = 80.0 Record Id:uthsc_nm_001039533, Gene Symbol:Pdxdc1 **Note: 1 sample BXD45 removed and keep BXD41

+ +

Revision 1.3 Untrimmed LRS=(23 999) ->233 records
+Max LRS = 80.7 Record Id:uthsc_nm_001039533, Gene Symbol:Pdxdc1

+ +

Revision 1.2 Untrimmed LRS=(23 999) ->190 records
+Max LRS = 56.9 Record Id:uthsc_nr_003513, Gene Symbol:Neat1

+ +

Revision 1 Untrimmed LRS=(23 999) ->126 records
+Max LRS = 35.3 Record Id:uthsc_nm_001113412, Gene Symbol:Fggy

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