The study included 187 mice (12~18 month) from B6, D2, D2-Gpmnb, B6D2F1, D2B6F1, and 87 advanced intercross BXD strains (about 2 mice per strain). All procedures were approved by the UTHSC Institutional Animal Care and Use Committee.
+ ++ +
The table of samples that are finally used for this study.
+ +|
+ Index + |
+
+ RNA ID + |
+
+ case ID + |
+
+ DA_corrected_strain + |
+
+ Corrected Sex + |
+
+ AgeAtDeath days + |
+
+ Tissue + |
+
|
+ 1 + |
+
+ E18 + |
+
+ 050115.16 + |
+
+ BXD75 + |
+
+ Female + |
+
+ 460 + |
+
+ Eyeball + |
+
|
+ 2 + |
+
+ E19 + |
+
+ 050115.17 + |
+
+ BXD75 + |
+
+ Female + |
+
+ 460 + |
+
+ Eyeball + |
+
|
+ 3 + |
+
+ E21 + |
+
+ 042715.10 + |
+
+ D2B6F1 + |
+
+ Female + |
+
+ 500 + |
+
+ Eyeball + |
+
|
+ 4 + |
+
+ E22 + |
+
+ 050115.19 + |
+
+ BXD79 + |
+
+ Female + |
+
+ 468 + |
+
+ Eyeball + |
+
|
+ 5 + |
+
+ E31 + |
+
+ 121515.13 + |
+
+ BXD45 + |
+
+ Female + |
+
+ 507 + |
+
+ Eyeball + |
+
|
+ 6 + |
+
+ E33 + |
+
+ 012615.10 + |
+
+ BXD45 + |
+
+ Female + |
+
+ 384 + |
+
+ Eyeball + |
+
|
+ 7 + |
+
+ E34 + |
+
+ 012615.04 + |
+
+ BXD62 + |
+
+ Female + |
+
+ 376 + |
+
+ Eyeball + |
+
|
+ 8 + |
+
+ E40 + |
+
+ 021213.21 + |
+
+ BXD79 + |
+
+ Female + |
+
+ 378 + |
+
+ Eyeball + |
+
|
+ 9 + |
+
+ E49 + |
+
+ 021213.13 + |
+
+ BXD60 + |
+
+ Female + |
+
+ 530 + |
+
+ Eyeball + |
+
|
+ 10 + |
+
+ E60 + |
+
+ 101713.01 + |
+
+ BXD60 + |
+
+ Female + |
+
+ 374 + |
+
+ Eyeball + |
+
|
+ 11 + |
+
+ E62 + |
+
+ 090612.07 + |
+
+ BXD73b + |
+
+ Female + |
+
+ 377 + |
+
+ Eyeball + |
+
|
+ 12 + |
+
+ E63 + |
+
+ 090612.08 + |
+
+ BXD73b + |
+
+ Female + |
+
+ 377 + |
+
+ Eyeball + |
+
|
+ 13 + |
+
+ E65 + |
+
+ 050912.04 + |
+
+ BXD34 + |
+
+ Female + |
+
+ 419 + |
+
+ Eyeball + |
+
|
+ 14 + |
+
+ E67 + |
+
+ 42214.08 + |
+
+ BXD40 + |
+
+ Female + |
+
+ 362 + |
+
+ Eyeball + |
+
|
+ 15 + |
+
+ E72 + |
+
+ 42214.04 + |
+
+ BXD24 + |
+
+ Female + |
+
+ 377 + |
+
+ Eyeball + |
+
|
+ 16 + |
+
+ E75 + |
+
+ 42214.03 + |
+
+ BXD24 + |
+
+ Female + |
+
+ 377 + |
+
+ Eyeball + |
+
|
+ 17 + |
+
+ E78 + |
+
+ 42314.1 + |
+
+ B6D2F1 + |
+
+ Male + |
+
+ 364 + |
+
+ Eyeball + |
+
|
+ 18 + |
+
+ E82 + |
+
+ 121615.05 + |
+
+ BXD62 + |
+
+ Female + |
+
+ 525 + |
+
+ Eyeball + |
+
|
+ 19 + |
+
+ E87 + |
+
+ 101014.10 + |
+
+ BXD95 + |
+
+ Female + |
+
+ 536 + |
+
+ Eyeball + |
+
|
+ 20 + |
+
+ E89 + |
+
+ 121615.22 + |
+
+ BXD89 + |
+
+ Female + |
+
+ 444 + |
+
+ Eyeball + |
+
|
+ 21 + |
+
+ E90 + |
+
+ 101014.09 + |
+
+ BXD95 + |
+
+ Female + |
+
+ 536 + |
+
+ Eyeball + |
+
|
+ 22 + |
+
+ E99 + |
+
+ 121214.15 + |
+
+ BXD70 + |
+
+ Female + |
+
+ 357 + |
+
+ Eyeball + |
+
|
+ 23 + |
+
+ E100 + |
+
+ 121214.16 + |
+
+ BXD70 + |
+
+ Female + |
+
+ 357 + |
+
+ Eyeball + |
+
|
+ 24 + |
+
+ E124 + |
+
+ 042214.18 + |
+
+ D2B6F1 + |
+
+ Male + |
+
+ 397 + |
+
+ Eyeball + |
+
|
+ 25 + |
+
+ E152 + |
+
+ 050912.04 + |
+
+ BXD48a + |
+
+ Female + |
+
+ 419 + |
+
+ Eyeball + |
+
|
+ 26 + |
+
+ E158 + |
+
+ 101713.02 + |
+
+ BXD100 + |
+
+ Female + |
+
+ 374 + |
+
+ Eyeball + |
+
|
+ 27 + |
+
+ E224 + |
+
+ 021313.26 + |
+
+ BXD84 + |
+
+ Female + |
+
+ 385 + |
+
+ Eyeball + |
+
|
+ 28 + |
+
+ E264 + |
+
+ *050318.12 + |
+
+ BXD69 + |
+
+ Male + |
+
+ 387 + |
+
+ Eyeball + |
+
|
+ 29 + |
+
+ E288 + |
+
+ *110918.106 + |
+
+ BXD211 + |
+
+ Male + |
+
+ 404 + |
+
+ Eyeball + |
+
|
+ 30 + |
+
+ E289 + |
+
+ *110918.105 + |
+
+ BXD211 + |
+
+ Female + |
+
+ 404 + |
+
+ Eyeball + |
+
|
+ 31 + |
+
+ E290 + |
+
+ *100218.04 + |
+
+ BXD44 + |
+
+ Female + |
+
+ 530 + |
+
+ Eyeball + |
+
|
+ 32 + |
+
+ E291 + |
+
+ *100218.05 + |
+
+ BXD44 + |
+
+ Male + |
+
+ 530 + |
+
+ Eyeball + |
+
|
+ 33 + |
+
+ E292 + |
+
+ *100218.18 + |
+
+ BXD68 + |
+
+ Female + |
+
+ 516 + |
+
+ Eyeball + |
+
|
+ 34 + |
+
+ E293 + |
+
+ *100218.20 + |
+
+ BXD68 + |
+
+ Male + |
+
+ 516 + |
+
+ Eyeball + |
+
|
+ 35 + |
+
+ E294 + |
+
+ *100218.36 + |
+
+ BXD84 + |
+
+ Female + |
+
+ 516 + |
+
+ Eyeball + |
+
|
+ 36 + |
+
+ E298 + |
+
+ *100218.73 + |
+
+ BXD184 + |
+
+ Female + |
+
+ 512 + |
+
+ Eyeball + |
+
|
+ 37 + |
+
+ E299 + |
+
+ *100218.74 + |
+
+ BXD184 + |
+
+ Male + |
+
+ 512 + |
+
+ Eyeball + |
+
|
+ 38 + |
+
+ E303 + |
+
+ AGE061218.98 + |
+
+ BXD177 + |
+
+ Female + |
+
+ 364 + |
+
+ Eyeball + |
+
|
+ 39 + |
+
+ E304 + |
+
+ AGE061218.108 + |
+
+ BXD195 + |
+
+ Male + |
+
+ 386 + |
+
+ Eyeball + |
+
|
+ 40 + |
+
+ E306 + |
+
+ AGE061218.107 + |
+
+ BXD195 + |
+
+ Female + |
+
+ 386 + |
+
+ Eyeball + |
+
|
+ 41 + |
+
+ E308 + |
+
+ AGE061218.99 + |
+
+ BXD177 + |
+
+ Male + |
+
+ 364 + |
+
+ Eyeball + |
+
|
+ 42 + |
+
+ E310 + |
+
+ AGE061218.90 + |
+
+ BXD168 + |
+
+ Male + |
+
+ 538 + |
+
+ Eyeball + |
+
|
+ 43 + |
+
+ E311 + |
+
+ AGE061218.85 + |
+
+ BXD160 + |
+
+ Male + |
+
+ 390 + |
+
+ Eyeball + |
+
|
+ 44 + |
+
+ E312 + |
+
+ AGE061218.71 + |
+
+ BXD150 + |
+
+ Male + |
+
+ 398 + |
+
+ Eyeball + |
+
|
+ 45 + |
+
+ E313 + |
+
+ AGE061218.22 + |
+
+ BXD34 + |
+
+ Male + |
+
+ 369 + |
+
+ Eyeball + |
+
|
+ 46 + |
+
+ E314 + |
+
+ AGE061218.21 + |
+
+ BXD34 + |
+
+ Female + |
+
+ 369 + |
+
+ Eyeball + |
+
|
+ 47 + |
+
+ E331 + |
+
+ *110918.07 + |
+
+ BXD28 + |
+
+ Male + |
+
+ 366 + |
+
+ Eyeball + |
+
|
+ 48 + |
+
+ E334 + |
+
+ *110918.02 + |
+
+ BXD18 + |
+
+ Male + |
+
+ 452 + |
+
+ Eyeball + |
+
|
+ 49 + |
+
+ E335 + |
+
+ *110918.01 + |
+
+ BXD18 + |
+
+ Female + |
+
+ 452 + |
+
+ Eyeball + |
+
|
+ 50 + |
+
+ E340 + |
+
+ *110918.51 + |
+
+ BXD98 + |
+
+ Male + |
+
+ 359 + |
+
+ Eyeball + |
+
|
+ 51 + |
+
+ E341 + |
+
+ *110918.50 + |
+
+ BXD98 + |
+
+ Female + |
+
+ 359 + |
+
+ Eyeball + |
+
|
+ 52 + |
+
+ E344 + |
+
+ *083019.05 + |
+
+ BXD9 + |
+
+ Female + |
+
+ 373 + |
+
+ Eyeball + |
+
|
+ 53 + |
+
+ E345 + |
+
+ *083019.06 + |
+
+ BXD9 + |
+
+ Male + |
+
+ 373 + |
+
+ Eyeball + |
+
|
+ 54 + |
+
+ E346 + |
+
+ *083019.22 + |
+
+ BXD31 + |
+
+ Male + |
+
+ 391 + |
+
+ Eyeball + |
+
|
+ 55 + |
+
+ E347 + |
+
+ *083019.23 + |
+
+ BXD43 + |
+
+ Female + |
+
+ 391 + |
+
+ Eyeball + |
+
|
+ 56 + |
+
+ E349 + |
+
+ *083019.26 + |
+
+ BXD43 + |
+
+ Male + |
+
+ 367 + |
+
+ Eyeball + |
+
|
+ 57 + |
+
+ E350 + |
+
+ *083019.30 + |
+
+ BXD50 + |
+
+ Female + |
+
+ 408 + |
+
+ Eyeball + |
+
|
+ 58 + |
+
+ E351 + |
+
+ *083019.31 + |
+
+ BXD50 + |
+
+ Female + |
+
+ 408 + |
+
+ Eyeball + |
+
|
+ 59 + |
+
+ E352 + |
+
+ *083019.33 + |
+
+ BXD51 + |
+
+ Female + |
+
+ 368 + |
+
+ Eyeball + |
+
|
+ 60 + |
+
+ E353 + |
+
+ *083019.34 + |
+
+ BXD51 + |
+
+ Male + |
+
+ 368 + |
+
+ Eyeball + |
+
|
+ 61 + |
+
+ E354 + |
+
+ *083019.38 + |
+
+ BXD66 + |
+
+ Male + |
+
+ 430 + |
+
+ Eyeball + |
+
|
+ 62 + |
+
+ E355 + |
+
+ *083019.39 + |
+
+ BXD66 + |
+
+ Male + |
+
+ 430 + |
+
+ Eyeball + |
+
|
+ 63 + |
+
+ E356 + |
+
+ *083019.45 + |
+
+ BXD73 + |
+
+ Female + |
+
+ 451 + |
+
+ Eyeball + |
+
|
+ 64 + |
+
+ E357 + |
+
+ *083019.46 + |
+
+ BXD73 + |
+
+ Male + |
+
+ 451 + |
+
+ Eyeball + |
+
|
+ 65 + |
+
+ E358 + |
+
+ *083019.48 + |
+
+ BXD75 + |
+
+ Female + |
+
+ 369 + |
+
+ Eyeball + |
+
|
+ 66 + |
+
+ E359 + |
+
+ *083019.49 + |
+
+ BXD75 + |
+
+ Male + |
+
+ 369 + |
+
+ Eyeball + |
+
|
+ 67 + |
+
+ E360 + |
+
+ *083019.50 + |
+
+ BXD78 + |
+
+ Female + |
+
+ 432 + |
+
+ Eyeball + |
+
|
+ 68 + |
+
+ E361 + |
+
+ *083019.51 + |
+
+ BXD78 + |
+
+ Male + |
+
+ 432 + |
+
+ Eyeball + |
+
|
+ 69 + |
+
+ E363 + |
+
+ *083019.55 + |
+
+ BXD87 + |
+
+ Female + |
+
+ 444 + |
+
+ Eyeball + |
+
|
+ 70 + |
+
+ E364 + |
+
+ *083019.56 + |
+
+ BXD87 + |
+
+ Male + |
+
+ 444 + |
+
+ Eyeball + |
+
|
+ 71 + |
+
+ E365 + |
+
+ *083019.57 + |
+
+ BXD89 + |
+
+ Female + |
+
+ 446 + |
+
+ Eyeball + |
+
|
+ 72 + |
+
+ E366 + |
+
+ *083019.66 + |
+
+ BXD113 + |
+
+ Female + |
+
+ 366 + |
+
+ Eyeball + |
+
|
+ 73 + |
+
+ E367 + |
+
+ *083019.67 + |
+
+ BXD113 + |
+
+ Male + |
+
+ 366 + |
+
+ Eyeball + |
+
|
+ 74 + |
+
+ E368 + |
+
+ *090119.04 + |
+
+ BXD123 + |
+
+ Female + |
+
+ 441 + |
+
+ Eyeball + |
+
|
+ 75 + |
+
+ E369 + |
+
+ *090119.05 + |
+
+ BXD123 + |
+
+ Male + |
+
+ 441 + |
+
+ Eyeball + |
+
|
+ 76 + |
+
+ E370 + |
+
+ *090119.09 + |
+
+ BXD141 + |
+
+ Female + |
+
+ 370 + |
+
+ Eyeball + |
+
|
+ 77 + |
+
+ E371 + |
+
+ *090119.11 + |
+
+ BXD141 + |
+
+ Male + |
+
+ 370 + |
+
+ Eyeball + |
+
|
+ 78 + |
+
+ E372 + |
+
+ *090119.15 + |
+
+ BXD151 + |
+
+ Female + |
+
+ 439 + |
+
+ Eyeball + |
+
|
+ 79 + |
+
+ E373 + |
+
+ *090119.16 + |
+
+ BXD151 + |
+
+ Male + |
+
+ 439 + |
+
+ Eyeball + |
+
|
+ 80 + |
+
+ E374 + |
+
+ *090119.18 + |
+
+ BXD152 + |
+
+ Female + |
+
+ 374 + |
+
+ Eyeball + |
+
|
+ 81 + |
+
+ E375 + |
+
+ *090119.19 + |
+
+ BXD152 + |
+
+ Male + |
+
+ 374 + |
+
+ Eyeball + |
+
|
+ 82 + |
+
+ E376 + |
+
+ *090119.20 + |
+
+ BXD154 + |
+
+ Female + |
+
+ 370 + |
+
+ Eyeball + |
+
|
+ 83 + |
+
+ E377 + |
+
+ *090119.22 + |
+
+ BXD154 + |
+
+ Male + |
+
+ 370 + |
+
+ Eyeball + |
+
|
+ 84 + |
+
+ E378 + |
+
+ *090119.24 + |
+
+ BXD155 + |
+
+ Female + |
+
+ 379 + |
+
+ Eyeball + |
+
|
+ 85 + |
+
+ E379 + |
+
+ *090119.25 + |
+
+ BXD155 + |
+
+ Male + |
+
+ 379 + |
+
+ Eyeball + |
+
|
+ 86 + |
+
+ E380 + |
+
+ *090119.27 + |
+
+ BXD161 + |
+
+ Female + |
+
+ 376 + |
+
+ Eyeball + |
+
|
+ 87 + |
+
+ E381 + |
+
+ *090119.28 + |
+
+ BXD161 + |
+
+ Male + |
+
+ 376 + |
+
+ Eyeball + |
+
|
+ 88 + |
+
+ E382 + |
+
+ *090119.34 + |
+
+ BXD170 + |
+
+ Male + |
+
+ 438 + |
+
+ Eyeball + |
+
|
+ 89 + |
+
+ E383 + |
+
+ *090119.36 + |
+
+ BXD171 + |
+
+ Female + |
+
+ 370 + |
+
+ Eyeball + |
+
|
+ 90 + |
+
+ E384 + |
+
+ *090119.37 + |
+
+ BXD171 + |
+
+ Male + |
+
+ 370 + |
+
+ Eyeball + |
+
|
+ 91 + |
+
+ E385 + |
+
+ *090119.41 + |
+
+ BXD178 + |
+
+ Female + |
+
+ 493 + |
+
+ Eyeball + |
+
|
+ 92 + |
+
+ E386 + |
+
+ *090119.42 + |
+
+ BXD178 + |
+
+ Female + |
+
+ 493 + |
+
+ Eyeball + |
+
|
+ 93 + |
+
+ E387 + |
+
+ *090119.44 + |
+
+ BXD180 + |
+
+ Female + |
+
+ 375 + |
+
+ Eyeball + |
+
|
+ 94 + |
+
+ E390 + |
+
+ *090119.48 + |
+
+ BXD190 + |
+
+ Male + |
+
+ 374 + |
+
+ Eyeball + |
+
|
+ 95 + |
+
+ E391 + |
+
+ *090119.52 + |
+
+ BXD197 + |
+
+ Female + |
+
+ 433 + |
+
+ Eyeball + |
+
|
+ 96 + |
+
+ E392 + |
+
+ *090119.53 + |
+
+ BXD197 + |
+
+ Male + |
+
+ 433 + |
+
+ Eyeball + |
+
|
+ 97 + |
+
+ E395 + |
+
+ *090119.57 + |
+
+ BXD202 + |
+
+ Female + |
+
+ 427 + |
+
+ Eyeball + |
+
|
+ 98 + |
+
+ E399 + |
+
+ *090119.67 + |
+
+ BXD218 + |
+
+ Female + |
+
+ 412 + |
+
+ Eyeball + |
+
|
+ 99 + |
+
+ E400 + |
+
+ *090119.68 + |
+
+ BXD218 + |
+
+ Male + |
+
+ 412 + |
+
+ Eyeball + |
+
|
+ 100 + |
+
+ E448 + |
+
+ *100819.101 + |
+
+ BXD111 + |
+
+ Female + |
+
+ 373 + |
+
+ Eyeball + |
+
|
+ 101 + |
+
+ E449 + |
+
+ *100819.102 + |
+
+ BXD111 + |
+
+ Male + |
+
+ 373 + |
+
+ Eyeball + |
+
|
+ 102 + |
+
+ E450 + |
+
+ *100819.104 + |
+
+ BXD122 + |
+
+ Female + |
+
+ 383 + |
+
+ Eyeball + |
+
|
+ 103 + |
+
+ E451 + |
+
+ *100819.105 + |
+
+ BXD122 + |
+
+ Male + |
+
+ 383 + |
+
+ Eyeball + |
+
|
+ 104 + |
+
+ E452 + |
+
+ *100819.107 + |
+
+ BXD124 + |
+
+ Female + |
+
+ 366 + |
+
+ Eyeball + |
+
|
+ 105 + |
+
+ E453 + |
+
+ *100819.108 + |
+
+ BXD124 + |
+
+ Male + |
+
+ 366 + |
+
+ Eyeball + |
+
|
+ 106 + |
+
+ E454 + |
+
+ *100819.110 + |
+
+ BXD125 + |
+
+ Female + |
+
+ 376 + |
+
+ Eyeball + |
+
|
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-- cgit v1.2.3