From d029d5d7f8ead1f1de8d318045004a4a6f68f5fb Mon Sep 17 00:00:00 2001
From: Bonface
Date: Fri, 9 Feb 2024 09:41:28 -0600
Subject: Update dataset RTF Files.

---
 general/datasets/UCSD_CFW_HIP_RNA_Seq_log2_0117/specifics.rtf | 5 +++++
 1 file changed, 5 insertions(+)
 create mode 100644 general/datasets/UCSD_CFW_HIP_RNA_Seq_log2_0117/specifics.rtf

(limited to 'general/datasets/UCSD_CFW_HIP_RNA_Seq_log2_0117/specifics.rtf')

diff --git a/general/datasets/UCSD_CFW_HIP_RNA_Seq_log2_0117/specifics.rtf b/general/datasets/UCSD_CFW_HIP_RNA_Seq_log2_0117/specifics.rtf
new file mode 100644
index 0000000..0ef5311
--- /dev/null
+++ b/general/datasets/UCSD_CFW_HIP_RNA_Seq_log2_0117/specifics.rtf
@@ -0,0 +1,5 @@
+<p>Notes: We took the raw fpkm values provided by Apurva from file GN811-UCSD_CFW_RNA-Seq_HIP_raw_FPKM.txt.zip (11M) and transformed to log2 Z-scored. (GN811-UCSD_CFW_RNA-Seq_HIP_log2_ZScore.txt.zip (4.0M))</p>
+
+<p>RNA-Seq Log2 Z-score</p>
+
+<p>In general, the array data that we put in GeneNetwork has been logged and then z normalized, but instead of leaving the mean at 0 and the standard deviation of 1 unit, we shift up to a mean of 8 units and increase the spread by having a standard deviation of 2 units (what we call 2Z + 8 normalized data). &nbsp;This removes negative values from the tables.</p>
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