From d029d5d7f8ead1f1de8d318045004a4a6f68f5fb Mon Sep 17 00:00:00 2001 From: Bonface Date: Fri, 9 Feb 2024 09:41:28 -0600 Subject: Update dataset RTF Files. --- general/datasets/SA_M2_0405_PC/tissue.rtf | 440 ++++++++++++++++++++++++++++++ 1 file changed, 440 insertions(+) create mode 100644 general/datasets/SA_M2_0405_PC/tissue.rtf (limited to 'general/datasets/SA_M2_0405_PC/tissue.rtf') diff --git a/general/datasets/SA_M2_0405_PC/tissue.rtf b/general/datasets/SA_M2_0405_PC/tissue.rtf new file mode 100644 index 0000000..6503813 --- /dev/null +++ b/general/datasets/SA_M2_0405_PC/tissue.rtf @@ -0,0 +1,440 @@ +
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Animals were obtained from The Jackson Laboratory and housed for several weeks at BIDMC until they reached ~2 months of age (range from 55 to 62 days). Mice were killed by cervical dislocation and brains were removed and placed in RNAlater for 20 to 25 minutes prior to dissection. Cerebella and olfactory bulbs were removed; brains were hemisected, and both striata were dissected using a medial approach by GD Rosen that typically yields 5 to 7 mg of tissue per side. The purity of this dissection has been validated by an analysis of acetylcholinestase activity. A pool of dissected tissue from 3 or 4 adults (approximately 25 to 30 mg of tissue) of the same strain, sex, and age was collected in one session and used to generate cRNA samples.

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The table below lists the arrays by strain, sex, sample name, and batch ID. Each array was hybridized to a pool of mRNA from 3 to 4 mice. All mice were between 55 and 62 days.
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IdStrainSexSample_nameBatchId
1C57BL/6JMChip41_Batch02_B6_M_StrBatch02
2C57BL/6JMChip11_Batch03_B6_M_StrBatch03
3BXD1FChip03_Batch03_BXD1_F_StrBatch03
4BXD1MChip04_Batch03_BXD1_M_StrBatch03
5BXD2FChip20_Rerun01_BXD2_F_StrRerun01
6BXD2MChip05_Batch01_BXD2_M_StrBatch01
7BXD5FChip10_Batch03_BXD5_F_StrBatch03
8BXD5MChip12_Batch03_BXD5_M_StrBatch03
9BXD6FChip38_Batch02_BXD6_F_StrBatch02
10BXD6MChip39_Batch02_BXD6_M_StrBatch02
11BXD8FChip07_Batch03_BXD8_F_StrBatch03
12BXD8MChip02_Batch03_BXD8_M_StrBatch03
13BXD9FChip16_Batch01_BXD9_F_StrBatch01
14BXD9MChip10_Batch01_BXD9_M_StrBatch01
15BXD11FChip31_Batch02_BXD11_F_StrBatch02
16BXD12FChip11_Batch01_BXD12_F_StrBatch01
17BXD12MChip18_Batch03_BXD12_M_StrBatch03
18BXD13FChip33_Batch02_BXD13_F_StrBatch02
19BXD14FChip48_Batch02_BXD14_F_StrBatch02
20BXD14MChip47_Rerun01_BXD14_M_StrRerun01
21BXD15FChip21_Batch01_BXD15_F_StrBatch01
22BXD15MChip13_Batch01_BXD15_M_StrBatch01
23BXD16FChip36_Batch02_BXD16_F_StrBatch02
24BXD16MChip44_Rerun01_BXD16_M_StrRerun01
25BXD18FChip15_Batch03_BXD18_F_StrBatch03
26BXD18MChip19_Batch03_BXD18_M_StrBatch03
27BXD19FChip19_Batch01_BXD19_F_StrBatch01
28BXD20FChip14_Batch03_BXD20_F_StrBatch03
29BXD21FChip18_Batch01_BXD21_F_StrBatch01
30BXD21MChip09_Batch01_BXD21_M_StrBatch01
31BXD22MChip13_Batch03_BXD22_M_StrBatch03
32BXD23MChip01_Batch03_BXD23_M_StrBatch03
33BXD24MChip17_Batch03_BXD24_M_StrBatch03
34BXD27FChip29_Batch02_BXD27_F_StrBatch02
35BXD27MChip40_Batch02_BXD27_M_StrBatch02
36BXD28FChip06_Batch01_BXD28_F_StrBatch01
37BXD28MChip23_Batch01_BXD28_M_StrBatch01
38BXD29FChip45_Batch02_BXD29_F_StrBatch02
39BXD29MChip42_Batch02_BXD29_M_StrBatch02
40BXD31FChip14_Batch01_BXD31_F_StrBatch01
41BXD31MChip09_Batch03_BXD31_M_StrBatch03
42BXD32MChip30_Batch02_BXD32_M_StrBatch02
43BXD33FChip27_Rerun01_BXD33_F_StrRerun01
44BXD33MChip34_Batch02_BXD33_M_StrBatch02
45BXD34FChip03_Batch01_BXD34_F_StrBatch01
46BXD34MChip07_Batch01_BXD34_M_StrBatch01
47BXD36FChip22_Batch03_BXD36_F_StrBatch03
48BXD36MChip24_Batch03_BXD36_M_StrBatch03
49BXD38FChip17_Batch01_BXD38_F_StrBatch01
50BXD38MChip24_Batch01_BXD38_M_StrBatch01
51BXD39MChip20_Batch03_BXD39_M_StrBatch03
52BXD39FChip23_Batch03_BXD39_F_StrBatch03
53BXD39MChip43_Rerun01_BXD39_M_StrRerun01
54BXD40FChip08_Rerun01_BXD40_F_StrRerun01
55BXD40MChip22_Batch01_BXD40_M_StrBatch01
56BXD42FChip35_Batch02_BXD42_F_StrBatch02
57BXD42MChip32_Batch02_BXD42_M_StrBatch02
58DBA/2JMChip02_Batch01_D2_M_StrBatch01
59DBA/2JMChip05_Batch03_D2_M_StrBatch03
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