From d029d5d7f8ead1f1de8d318045004a4a6f68f5fb Mon Sep 17 00:00:00 2001 From: Bonface Date: Fri, 9 Feb 2024 09:41:28 -0600 Subject: Update dataset RTF Files. --- general/datasets/LVF2_M_0704_R/platform.rtf | 876 ++++++++++++++++++++++++++++ 1 file changed, 876 insertions(+) create mode 100644 general/datasets/LVF2_M_0704_R/platform.rtf (limited to 'general/datasets/LVF2_M_0704_R/platform.rtf') diff --git a/general/datasets/LVF2_M_0704_R/platform.rtf b/general/datasets/LVF2_M_0704_R/platform.rtf new file mode 100644 index 0000000..29c90d3 --- /dev/null +++ b/general/datasets/LVF2_M_0704_R/platform.rtf @@ -0,0 +1,876 @@ +
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Affymetrix Mouse Genome 430A and 430B array pairs: The 430A and B array pairs collectively consist of 992936 25-nucleotide probes that estimate the expression of approximately 39,000 transcripts (some are variant transcipts and many are duplicates). The array sequences were selected late in 2002 using Unigene Build 107. The arrays nominally contain the same probe sequence as the 430 2.0 series. However, roughy 75000 probes differ between those on A and B arrays and those on the 430 2.0.

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Liver samples were assayed individually using 60 M430A and B Affymetrix oligonucleotide microarray pairs. Each array ID is denoted by a 10-letter code: the first three letters represent the F2-ob/ob mouse ID number, the fourth letter (either A or B) denotes M430A or M430B arrays, and the last six letters represent the date the array was scanned (MMDDYY).
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All 120 M430A and B arrays used in this project were purchased at one time and had the same Affymetrix lot number. The table below lists the arrays by Animal ID, sex, and ArrayID.
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Animal ID

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sex

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MOE430A ArrayID

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MOE430B ArrayID

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2

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+

M

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002A100203

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+

002B100503

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12

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+

M

+
+

012A100203

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+

012B100503

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22

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+

M

+
+

022A100203

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+

022B100503

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+

44

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+

M

+
+

044A100203

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+

044B100503

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+

46

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+

M

+
+

046A100203

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+

046B100503

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61

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+

M

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+

061A100203

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+

061B100503

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100

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+

M

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+

100A100303

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+

100B100503

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105

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+

F

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105A100303

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105B100503

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111

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F

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111A100303

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+

111B100503

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123

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M

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123A100303

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123B100503

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156

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F

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156A100303

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156B100503

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165

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+

M

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165A100303

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165B100503

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167

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+

M

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167A100303

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167B100503

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173

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+

M

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173A100303

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173B100503

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186

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F

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+

186A100203

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186B100503

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190

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+

F

+
+

190A100303

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190B100503

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194

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+

M

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194A100303

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194B100503

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200

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+

F

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+

200A100303

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200B100503

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207

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+

F

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207A100303

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207B100503

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209

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+

F

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+

209A100203

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209B100503

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212

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F

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212A100303

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212B100503

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223

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M

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223A100303

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223B100503

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224

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+

M

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224A100303

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224B100503

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253

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F

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253A100303

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253B100503

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254

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+

F

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254A100603

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254B100703

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260

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+

F

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+

260A100603

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260B100703

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264

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+

F

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264A100603

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264B100703

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310

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F

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+

310A100603

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310B100703

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317

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M

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317A100603

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317B100703

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318

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+

F

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318A100603

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318B100703

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324

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F

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324A100603

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324B100703

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327

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F

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327A100603

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327B100703

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343

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M

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343A100603

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343B100703

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416

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M

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416A100603

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416B100703

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419

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F

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419A100603

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419B100703

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438

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M

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438A100603

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438B100703

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440

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+

M

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440A100603

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440B100803

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455

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M

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455A100603

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455B100803

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458

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F

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458A100603

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458B100803

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472

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M

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472A100603

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472B100803

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474

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F

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474A100603

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474B100803

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479

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F

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479A100603

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479B100803

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484

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F

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484A100603

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484B100803

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486

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F

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486A100603

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486B100803

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489

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F

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489A100603

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489B100803

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493

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F

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493A100603

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493B100803

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499

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M

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499A100603

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499B100803

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513

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M

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513A100603

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513B100803

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517

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M

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517A100703

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517B100803

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523

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M

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523A100703

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523B100803

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549

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M

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549A100703

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549B100803

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553

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F

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553A100703

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553B100803

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554

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F

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554A100703

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554B100803

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559

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F

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559A100703

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559B100803

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560

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F

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560A100703

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560B100803

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566

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+

M

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566A100703

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566B100803

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608

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F

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608A100703

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608B100803

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615

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F

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615A100703

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615B100803

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617

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M

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617A100703

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617B100803

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620

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+

M

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620A100703

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620B100803

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