From d029d5d7f8ead1f1de8d318045004a4a6f68f5fb Mon Sep 17 00:00:00 2001 From: Bonface Date: Fri, 9 Feb 2024 09:41:28 -0600 Subject: Update dataset RTF Files. --- general/datasets/JAX_D2GM_RSeq_log2Z_0418/specifics.rtf | 3 +++ 1 file changed, 3 insertions(+) create mode 100644 general/datasets/JAX_D2GM_RSeq_log2Z_0418/specifics.rtf (limited to 'general/datasets/JAX_D2GM_RSeq_log2Z_0418/specifics.rtf') diff --git a/general/datasets/JAX_D2GM_RSeq_log2Z_0418/specifics.rtf b/general/datasets/JAX_D2GM_RSeq_log2Z_0418/specifics.rtf new file mode 100644 index 0000000..f57a155 --- /dev/null +++ b/general/datasets/JAX_D2GM_RSeq_log2Z_0418/specifics.rtf @@ -0,0 +1,3 @@ +

RNA-Seq log2 Z-Score

+ +

In general, the array data that we put in GeneNetwork has been logged and then z normalized, but instead of leaving the mean at 0 and the standard deviation of 1 unit, we shift up to a mean of 8 units and increase the spread by having an standard deviation of 2 units (what we call 2Z + 8 normalized data).  This removes negative values from the tables.

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