From b2feda451ccfbeaed02dce9088d6dd228cf15861 Mon Sep 17 00:00:00 2001 From: Bonface Date: Tue, 13 Feb 2024 23:52:26 -0600 Subject: Update dataset RTF Files. --- general/datasets/Inia_pituitary_rma_m_0612/processing.rtf | 1 + 1 file changed, 1 insertion(+) create mode 100644 general/datasets/Inia_pituitary_rma_m_0612/processing.rtf (limited to 'general/datasets/Inia_pituitary_rma_m_0612/processing.rtf') diff --git a/general/datasets/Inia_pituitary_rma_m_0612/processing.rtf b/general/datasets/Inia_pituitary_rma_m_0612/processing.rtf new file mode 100644 index 0000000..55aad2e --- /dev/null +++ b/general/datasets/Inia_pituitary_rma_m_0612/processing.rtf @@ -0,0 +1 @@ +

Conventional Affymetrix gene level probe summarization (RMA) followed by log2 transformation and standard GeneNetwork variance stabilization (2z +8). The z scores are multiplied by 2 and we then add a value of 8 to all values. This eliminates negative values and results in a scale of expression for which 1 unit is roughly equivalent to a two fold absolute difference in mRNA concentration.

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