From d029d5d7f8ead1f1de8d318045004a4a6f68f5fb Mon Sep 17 00:00:00 2001
From: Bonface
Date: Fri, 9 Feb 2024 09:41:28 -0600
Subject: Update dataset RTF Files.
---
general/datasets/INIA_Hyp_PCA_0813/cases.rtf | 916 +++++++++++++++++++++++++++
1 file changed, 916 insertions(+)
create mode 100644 general/datasets/INIA_Hyp_PCA_0813/cases.rtf
(limited to 'general/datasets/INIA_Hyp_PCA_0813/cases.rtf')
diff --git a/general/datasets/INIA_Hyp_PCA_0813/cases.rtf b/general/datasets/INIA_Hyp_PCA_0813/cases.rtf
new file mode 100644
index 0000000..f19e9c8
--- /dev/null
+++ b/general/datasets/INIA_Hyp_PCA_0813/cases.rtf
@@ -0,0 +1,916 @@
+The BXD recombinant inbred strains are derived from crossing the C57BL/6J (B6) and DBA/2J (D2) parental strains and inbreeding for over 20 generations (Taylor et al., 1999; Peirce et al., 2004). All mice used in this study were born and housed at the University of Tennessee Health Science Center. Mice were kept at an average of 3–4 per cage in a temperature-controlled vivarium (22 deg C) and maintained at a 12 h light/dark cycle. All animal protocols were approved by the Animal Care and Use Committee. We studied a total of 50 BXD strains, but only acquired matched male–female data pairs for 39 strains (35 BXD strains, parental B6 and D2, and two reciprocal F1 hybrids, B6D2F1 and D2B6F1). The average age of mice was 78 days. We provide more detail on the experimen-tal design and precise age and time of sacriï¬ce of all cases at stored in 4 deg C for 2–3 days. To dissect the hypothalamus, the brain was placed with the ventral side facing up in a coronal "brain cutting" matrix. Using the medial mammillary body as landmark, a vertical cut was made right along the posterior boundary of the hypothala-mus. A second vertical cut was made 2 mm from the ï¬rst cut. This edge lies slightly caudal to the optic chiasm and cuts through the retrochiasmatic nucleus. The hypothalamus was then sliced out from this 2 mm thick section. Each of the 39 mouse strains is represented by male and female samples (total of 78 microarray samples). Each individual sample consisted of tissue pooled from two mice of the same strain and sex that are usually littermates. The total number of mice used was 78 females and 78 males. RNA was puriï¬ed using the RNAeasy micro kit on the QIAcube system (Qiagen)2. RNA purity and concen-tration was checked using 260/280 nm absorbance ratio and RNA integrity was analyzed using the Agilent Bioanalyzer 2100 (Agilent Technologies).
+
+
+
+
+
+
+
+
+ | Index |
+ Array ID |
+ Tissue |
+ Strain |
+ Age |
+ Sex |
+ Date sacrifice |
+ Time sacrifice |
+
+
+ | 1 |
+ R6854HYP |
+ Hyp |
+ C57BL/6J |
+ 77 |
+ F |
+ 8/18/10 |
+ 8:45AM to 12:30 PM |
+
+
+ | 2 |
+ R6862HYP |
+ Hyp |
+ C57BL/6J |
+ 77 |
+ M |
+ 8/18/10 |
+ 8:45AM to 12:30 PM |
+
+
+ | 3 |
+ R6852HYP |
+ Hyp |
+ D2B6F1 |
+ 77 |
+ F |
+ 8/18/10 |
+ 8:45AM to 12:30 PM |
+
+
+ | 4 |
+ R6860HYP |
+ Hyp |
+ D2B6F1 |
+ 77 |
+ M |
+ 8/18/10 |
+ 8:45AM to 12:30 PM |
+
+
+ | 5 |
+ R6864HYP |
+ Hyp |
+ DBA/2J |
+ 77 |
+ F |
+ 8/18/10 |
+ 8:45AM to 12:30 PM |
+
+
+ | 6 |
+ R6866HYP |
+ Hyp |
+ DBA/2J |
+ 68 |
+ M |
+ 8/18/10 |
+ 8:45AM to 12:30 PM |
+
+
+ | 7 |
+ R6858HYP |
+ Hyp |
+ B6D2F1 |
+ 69 |
+ F |
+ 8/18/10 |
+ 8:45AM to 12:30 PM |
+
+
+ | 8 |
+ R6856HYP |
+ Hyp |
+ B6D2F1 |
+ 69 |
+ M |
+ 8/18/10 |
+ 8:45AM to 12:30 PM |
+
+
+ | 9 |
+ R6800HYP |
+ Hyp |
+ BXD1 |
+ 71 |
+ F |
+ 8/17/10 |
+ 1:15 PM to 5 PM |
+
+
+ | 10 |
+ R6796HYP |
+ Hyp |
+ BXD1 |
+ 85 |
+ M |
+ 8/17/10 |
+ 1:15 PM to 5 PM |
+
+
+ | 11 |
+ R6788HYP |
+ Hyp |
+ BXD11 |
+ 87 |
+ F |
+ 8/17/10 |
+ 1:15 PM to 5 PM |
+
+
+ | 12 |
+ R6786HYP |
+ Hyp |
+ BXD11 |
+ 76 |
+ M |
+ 8/17/10 |
+ 1:15 PM to 5 PM |
+
+
+ | 13 |
+ R6806HYP |
+ Hyp |
+ BXD12 |
+ 77 |
+ M |
+ 8/17/10 |
+ 1:15 PM to 5 PM |
+
+
+ | 14 |
+ R6812HYP |
+ Hyp |
+ BXD14 |
+ 81 |
+ F |
+ 8/18/10 |
+ 8:45AM to 12:30 PM |
+
+
+ | 15 |
+ R6804HYP |
+ Hyp |
+ BXD24 |
+ 85 |
+ F |
+ 8/17/10 |
+ 1:15 PM to 5 PM |
+
+
+ | 16 |
+ R6792HYP |
+ Hyp |
+ BXD27 |
+ 75 |
+ F |
+ 8/17/10 |
+ 1:15 PM to 5 PM |
+
+
+ | 17 |
+ R6790HYP |
+ Hyp |
+ BXD27 |
+ 73 |
+ M |
+ 8/17/10 |
+ 1:15 PM to 5 PM |
+
+
+ | 18 |
+ R6798HYP |
+ Hyp |
+ BXD29 |
+ 71 |
+ F |
+ 8/17/10 |
+ 1:15 PM to 5 PM |
+
+
+ | 19 |
+ R6794HYP |
+ Hyp |
+ BXD29 |
+ 71 |
+ M |
+ 8/17/10 |
+ 1:15 PM to 5 PM |
+
+
+ | 20 |
+ R6816HYP |
+ Hyp |
+ BXD31 |
+ 74 |
+ F |
+ 8/18/10 |
+ 8:45AM to 12:30 PM |
+
+
+ | 21 |
+ R6802HYP |
+ Hyp |
+ BXD31 |
+ 73 |
+ M |
+ 8/17/10 |
+ 1:15 PM to 5 PM |
+
+
+ | 22 |
+ R6916HYP |
+ Hyp |
+ BXD32 |
+ 81 |
+ F |
+ 8/18/10 |
+ 1 PM to 6:45 PM |
+
+
+ | 23 |
+ R6846HYP |
+ Hyp |
+ BXD32 |
+ 81 |
+ M |
+ 8/18/10 |
+ 8:45AM to 12:30 PM |
+
+
+ | 24 |
+ R6822HYP |
+ Hyp |
+ BXD34 |
+ 77 |
+ F |
+ 8/18/10 |
+ 8:45AM to 12:30 PM |
+
+
+ | 25 |
+ R6808HYP |
+ Hyp |
+ BXD34 |
+ 77 |
+ M |
+ 8/18/10 |
+ 8:45AM to 12:30 PM |
+
+
+ | 26 |
+ R6814HYP |
+ Hyp |
+ BXD39 |
+ 79 |
+ M |
+ 8/18/10 |
+ 8:45AM to 12:30 PM |
+
+
+ | 27 |
+ R6848HYP |
+ Hyp |
+ BXD40 |
+ 85 |
+ F |
+ 8/18/10 |
+ 8:45AM to 12:30 PM |
+
+
+ | 28 |
+ R6850HYP |
+ Hyp |
+ BXD40 |
+ 85 |
+ M |
+ 8/18/10 |
+ 8:45AM to 12:30 PM |
+
+
+ | 29 |
+ R6810HYP |
+ Hyp |
+ BXD42 |
+ 87 |
+ F |
+ 8/18/10 |
+ 8:45AM to 12:30 PM |
+
+
+ | 30 |
+ R6758HYP |
+ Hyp |
+ BXD43 |
+ 81 |
+ M |
+ 8/17/10 |
+ 9:30 AM to 12:30AM |
+
+
+ | 31 |
+ R6746HYP |
+ Hyp |
+ BXD44 |
+ 83 |
+ F |
+ 8/17/10 |
+ 9:30 AM to 12:30AM |
+
+
+ | 32 |
+ R6750HYP |
+ Hyp |
+ BXD44 |
+ 83 |
+ M |
+ 8/17/10 |
+ 9:30 AM to 12:30AM |
+
+
+ | 33 |
+ R6764HYP |
+ Hyp |
+ BXD45 |
+ 77 |
+ F |
+ 8/17/10 |
+ 9:30 AM to 12:30AM |
+
+
+ | 34 |
+ R6762HYP |
+ Hyp |
+ BXD45 |
+ 77 |
+ M |
+ 8/17/10 |
+ 9:30 AM to 12:30AM |
+
+
+ | 35 |
+ R6880HYP |
+ Hyp |
+ BXD48 |
+ 76 |
+ F |
+ 8/18/10 |
+ 1 PM to 6:45 PM |
+
+
+ | 36 |
+ R6882HYP |
+ Hyp |
+ BXD48 |
+ 76 |
+ M |
+ 8/18/10 |
+ 1 PM to 6:45 PM |
+
+
+ | 37 |
+ R6748HYP |
+ Hyp |
+ BXD49 |
+ 84 |
+ M |
+ 8/17/10 |
+ 9:30 AM to 12:30AM |
+
+
+ | 38 |
+ R6890HYP |
+ Hyp |
+ BXD50 |
+ 77 |
+ F |
+ 8/18/10 |
+ 1 PM to 6:45 PM |
+
+
+ | 39 |
+ R6892HYP |
+ Hyp |
+ BXD50 |
+ 77 |
+ M |
+ 8/18/10 |
+ 1 PM to 6:45 PM |
+
+
+ | 40 |
+ R6918HYP |
+ Hyp |
+ BXD56 |
+ 84 |
+ F |
+ 8/18/10 |
+ 1 PM to 6:45 PM |
+
+
+ | 41 |
+ R6894HYP |
+ Hyp |
+ BXD56 |
+ 77 |
+ M |
+ 8/18/10 |
+ 1 PM to 6:45 PM |
+
+
+ | 42 |
+ R6770HYP |
+ Hyp |
+ BXD60 |
+ 70 |
+ F |
+ 8/17/10 |
+ 9:30 AM to 12:30AM |
+
+
+ | 43 |
+ R6772HYP |
+ Hyp |
+ BXD60 |
+ 70 |
+ M |
+ 8/17/10 |
+ 1:15 PM to 5 PM |
+
+
+ | 44 |
+ R6836HYP |
+ Hyp |
+ BXD62 |
+ 83 |
+ F |
+ 8/18/10 |
+ 8:45AM to 12:30 PM |
+
+
+ | 45 |
+ R6844HYP |
+ Hyp |
+ BXD62 |
+ 83 |
+ M |
+ 8/18/10 |
+ 8:45AM to 12:30 PM |
+
+
+ | 46 |
+ R6888HYP |
+ Hyp |
+ BXD63 |
+ 77 |
+ F |
+ 8/18/10 |
+ 1 PM to 6:45 PM |
+
+
+ | 47 |
+ R6878HYP |
+ Hyp |
+ BXD65 |
+ 84 |
+ F |
+ 8/18/10 |
+ 1 PM to 6:45 PM |
+
+
+ | 48 |
+ R6874HYP |
+ Hyp |
+ BXD65 |
+ 84 |
+ M |
+ 8/18/10 |
+ 1 PM to 6:45 PM |
+
+
+ | 49 |
+ R6930HYP |
+ Hyp |
+ BXD68 |
+ 76 |
+ F |
+ 8/18/10 |
+ 1 PM to 6:45 PM |
+
+
+ | 50 |
+ R6932HYP |
+ Hyp |
+ BXD68 |
+ 76 |
+ M |
+ 8/18/10 |
+ 1 PM to 6:45 PM |
+
+
+ | 51 |
+ R6776HYP |
+ Hyp |
+ BXD69 |
+ 69 |
+ F |
+ 8/17/10 |
+ 1:15 PM to 5 PM |
+
+
+ | 52 |
+ R6774HYP |
+ Hyp |
+ BXD69 |
+ 80 |
+ M |
+ 8/17/10 |
+ 1:15 PM to 5 PM |
+
+
+ | 53 |
+ R6926HYP |
+ Hyp |
+ BXD70 |
+ 76 |
+ F |
+ 8/18/10 |
+ 1 PM to 6:45 PM |
+
+
+ | 54 |
+ R6922HYP |
+ Hyp |
+ BXD70 |
+ 76 |
+ M |
+ 8/18/10 |
+ 1 PM to 6:45 PM |
+
+
+ | 55 |
+ R6870HYP |
+ Hyp |
+ BXD71 |
+ 76 |
+ F |
+ 8/18/10 |
+ 1 PM to 6:45 PM |
+
+
+ | 56 |
+ R6872HYP |
+ Hyp |
+ BXD71 |
+ 76 |
+ M |
+ 8/18/10 |
+ 1 PM to 6:45 PM |
+
+
+ | 57 |
+ R6778HYP |
+ Hyp |
+ BXD73 |
+ 83 |
+ F |
+ 8/17/10 |
+ 1:15 PM to 5 PM |
+
+
+ | 58 |
+ R6780HYP |
+ Hyp |
+ BXD73 |
+ 83 |
+ M |
+ 8/17/10 |
+ 1:15 PM to 5 PM |
+
+
+ | 59 |
+ R6838HYP |
+ Hyp |
+ BXD75 |
+ 76 |
+ F |
+ 8/18/10 |
+ 8:45AM to 12:30 PM |
+
+
+ | 60 |
+ R6830HYP |
+ Hyp |
+ BXD75 |
+ 76 |
+ M |
+ 8/18/10 |
+ 8:45AM to 12:30 PM |
+
+
+ | 61 |
+ R6934HYP |
+ Hyp |
+ BXD79 |
+ 87 |
+ F |
+ 8/18/10 |
+ 1 PM to 6:45 PM |
+
+
+ | 62 |
+ R6782HYP |
+ Hyp |
+ BXD80 |
+ 73 |
+ F |
+ 8/17/10 |
+ 1:15 PM to 5 PM |
+
+
+ | 63 |
+ R6784HYP |
+ Hyp |
+ BXD80 |
+ 73 |
+ M |
+ 8/17/10 |
+ 1:15 PM to 5 PM |
+
+
+ | 64 |
+ R6914HYP |
+ Hyp |
+ BXD83 |
+ 81 |
+ F |
+ 8/18/10 |
+ 1 PM to 6:45 PM |
+
+
+ | 65 |
+ R6912HYP |
+ Hyp |
+ BXD83 |
+ 81 |
+ M |
+ 8/18/10 |
+ 1 PM to 6:45 PM |
+
+
+ | 66 |
+ R6834HYP |
+ Hyp |
+ BXD84 |
+ 76 |
+ M |
+ 8/18/10 |
+ 8:45AM to 12:30 PM |
+
+
+ | 67 |
+ R6938HYP |
+ Hyp |
+ BXD85 |
+ 74 |
+ F |
+ 8/18/10 |
+ 1 PM to 6:45 PM |
+
+
+ | 68 |
+ R6940HYP |
+ Hyp |
+ BXD85 |
+ 74 |
+ M |
+ 8/18/10 |
+ 1 PM to 6:45 PM |
+
+
+ | 69 |
+ R6910HYP |
+ Hyp |
+ BXD87 |
+ 83 |
+ F |
+ 8/18/10 |
+ 1 PM to 6:45 PM |
+
+
+ | 70 |
+ R6908HYP |
+ Hyp |
+ BXD87 |
+ 83 |
+ M |
+ 8/18/10 |
+ 1 PM to 6:45 PM |
+
+
+ | 71 |
+ R6896HYP |
+ Hyp |
+ BXD89 |
+ 82 |
+ F |
+ 8/18/10 |
+ 1 PM to 6:45 PM |
+
+
+ | 72 |
+ R6898HYP |
+ Hyp |
+ BXD89 |
+ 82 |
+ M |
+ 8/18/10 |
+ 1 PM to 6:45 PM |
+
+
+ | 73 |
+ R6904HYP |
+ Hyp |
+ BXD90 |
+ 82 |
+ F |
+ 8/18/10 |
+ 1 PM to 6:45 PM |
+
+
+ | 74 |
+ R6906HYP |
+ Hyp |
+ BXD90 |
+ 82 |
+ M |
+ 8/18/10 |
+ 1 PM to 6:45 PM |
+
+
+ | 75 |
+ R6924HYP |
+ Hyp |
+ BXD92 |
+ 86 |
+ F |
+ 8/18/10 |
+ 1 PM to 6:45 PM |
+
+
+ | 76 |
+ R6928HYP |
+ Hyp |
+ BXD92 |
+ 89 |
+ M |
+ 8/18/10 |
+ 1 PM to 6:45 PM |
+
+
+ | 77 |
+ R6920HYP |
+ Hyp |
+ BXD95 |
+ 76 |
+ F |
+ 8/18/10 |
+ 1 PM to 6:45 PM |
+
+
+ | 78 |
+ R6868HYP |
+ Hyp |
+ BXD95 |
+ 76 |
+ M |
+ 8/18/10 |
+ 8:45AM to 12:30 PM |
+
+
+ | 79 |
+ R6900HYP |
+ Hyp |
+ BXD97 |
+ 71 |
+ F |
+ 8/18/10 |
+ 1 PM to 6:45 PM |
+
+
+ | 80 |
+ R6902HYP |
+ Hyp |
+ BXD97 |
+ 71 |
+ M |
+ 8/18/10 |
+ 1 PM to 6:45 PM |
+
+
+ | 81 |
+ R6876HYP |
+ Hyp |
+ BXD99 |
+ 77 |
+ F |
+ 8/18/10 |
+ 1 PM to 6:45 PM |
+
+
+ | 82 |
+ R6884HYP |
+ Hyp |
+ BXD99 |
+ 77 |
+ M |
+ 8/18/10 |
+ 1 PM to 6:45 PM |
+
+
+ | 83 |
+ R6840HYP |
+ Hyp |
+ BXD100 |
+ 83 |
+ F |
+ 8/18/10 |
+ 8:45AM to 12:30 PM |
+
+
+ | 84 |
+ R6832HYP |
+ Hyp |
+ BXD100 |
+ 83 |
+ M |
+ 8/18/10 |
+ 8:45AM to 12:30 PM |
+
+
+ | 85 |
+ R6944HYP |
+ Hyp |
+ BXD101 |
+ 89 |
+ F |
+ 8/18/10 |
+ 1 PM to 6:45 PM |
+
+
+ | 86 |
+ R6942HYP |
+ Hyp |
+ BXD101 |
+ 89 |
+ M |
+ 8/18/10 |
+ 1 PM to 6:45 PM |
+
+
+ | 87 |
+ R6756HYP |
+ Hyp |
+ BXD102 |
+ 88 |
+ M |
+ 8/17/10 |
+ 9:30 AM to 12:30AM |
+
+
+ | 88 |
+ R6768HYP |
+ Hyp |
+ BXD103 |
+ 78 |
+ F |
+ 8/17/10 |
+ 9:30 AM to 12:30AM |
+
+
+ | 89 |
+ R6766HYP |
+ Hyp |
+ BXD103 |
+ 78 |
+ M |
+ 8/17/10 |
+ 9:30 AM to 12:30AM |
+
+
+
+ |
+
+
+
+
+
--
cgit v1.2.3