From b2feda451ccfbeaed02dce9088d6dd228cf15861 Mon Sep 17 00:00:00 2001 From: Bonface Date: Tue, 13 Feb 2024 23:52:26 -0600 Subject: Update dataset RTF Files. --- .../HBTRC-MLPFC_HD_0611/acknowledgment.rtf | 1 + general/datasets/HBTRC-MLPFC_HD_0611/cases.rtf | 4166 ++++++++++++++++++++ .../HBTRC-MLPFC_HD_0611/experiment-design.rtf | 1 + general/datasets/HBTRC-MLPFC_HD_0611/notes.rtf | 6 + general/datasets/HBTRC-MLPFC_HD_0611/platform.rtf | 1 + .../datasets/HBTRC-MLPFC_HD_0611/processing.rtf | 1 + general/datasets/HBTRC-MLPFC_HD_0611/summary.rtf | 1 + general/datasets/HBTRC-MLPFC_HD_0611/tissue.rtf | 1 + 8 files changed, 4178 insertions(+) create mode 100644 general/datasets/HBTRC-MLPFC_HD_0611/acknowledgment.rtf create mode 100644 general/datasets/HBTRC-MLPFC_HD_0611/cases.rtf create mode 100644 general/datasets/HBTRC-MLPFC_HD_0611/experiment-design.rtf create mode 100644 general/datasets/HBTRC-MLPFC_HD_0611/notes.rtf create mode 100644 general/datasets/HBTRC-MLPFC_HD_0611/platform.rtf create mode 100644 general/datasets/HBTRC-MLPFC_HD_0611/processing.rtf create mode 100644 general/datasets/HBTRC-MLPFC_HD_0611/summary.rtf create mode 100644 general/datasets/HBTRC-MLPFC_HD_0611/tissue.rtf (limited to 'general/datasets/HBTRC-MLPFC_HD_0611') diff --git a/general/datasets/HBTRC-MLPFC_HD_0611/acknowledgment.rtf b/general/datasets/HBTRC-MLPFC_HD_0611/acknowledgment.rtf new file mode 100644 index 0000000..208cb6e --- /dev/null +++ b/general/datasets/HBTRC-MLPFC_HD_0611/acknowledgment.rtf @@ -0,0 +1 @@ +

The Harvard Brain dataset was contributed by Merck Pharmaceutical through the Sage Bionetworks Repository. The tissues were provided by Harvard Brain Tissue Resource Center which is supported in part by PHS grant R24 MH068855 (http://www.brainbank.mclean.org/).

diff --git a/general/datasets/HBTRC-MLPFC_HD_0611/cases.rtf b/general/datasets/HBTRC-MLPFC_HD_0611/cases.rtf new file mode 100644 index 0000000..86ed08e --- /dev/null +++ b/general/datasets/HBTRC-MLPFC_HD_0611/cases.rtf @@ -0,0 +1,4166 @@ +

This data packet contains genotypes, clinical traits, as well as expression traits measured in three regions of the brain: visual cortex, cerebellum, prefrontal cortex. Samples were collected from 803 participants including 388 diagnosed with Alzheimer's disease and 220 diagnosed with Huntington's disease. Genotypes were run using two platforms (Illumina and Perlagen). Expression traits were profiled using a custom Agilent platform. Western-IRB has confirmed that this dataset residing in Sage Bionetworks Repository is 'exempt' under federal regulation 45 CFR 46.101(b)4 and does not involve human subject research as defined by OHRP guidelines.

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SeriesCerebellum in GNConditionGenderBioSample Name
1HB_029_NNNA3405_VC_N_0859
2HB_058_NNNA4021_VC_N_0854
3HB_064_NNNA4338_VC_N_0861
4HB_086_NNNA4729_PF_N_0756
5HB_091_NNNA4741_VC_N_0864
6HB_092_NNNA4744_VC_N_0865
7HB_102_NNNA4810_VC_N_0869
8HB_119_NNNA4872_VC_N_0878
9HB_147_NNNA5021_VC_N_0852
10HB_161_NNNA5077_VC_N_0851
11HB_162_NNNA5081_VC_N_1021
12HB_166_NNNA5095_VC_N_1024
13HB_183_NNNA5162_VC_N_0850
14HB_206_NNNA5245_VC_N_0849
15HB_215_NNNA5270_VC_N_0848
16HB_218_NNNA5276_CR_N_0912
17HB_223_NNNA5287_VC_N_0916
18HB_226_NNNA5294_VC_N_0919
19HB_241_NNNA5326_CR_N_0652
20HB_243_NNNA5333_VC_N_1262
21HB_247_NNNA5341_VC_N_0923
22HB_257_NNNA5368_PF_N_1032
23HB_264_NNNA5384_VC_N_0924
24HB_295_NNNA5452_VC_N_1268
25HB_300_NNNA5463_VC_N_0845
26HB_311_NNNA5489_CR_N_0942
27HB_324_NNNA5531_VC_N_0844
28HB_332_NNNA5547_VC_N_0843
29HB_340_NNNA5568_VC_N_0842
30HB_360_NNNA5619_CR_N_0645
31HB_365_NNNA5632_VC_N_0838
32HB_367_NNNA5637_VC_N_0837
33HB_382_NNNA5684_PF_N_1270
34HB_396_NNNA5718_VC_N_0956
35HB_398_NNNA5722_VC_N_1044
36HB_400_NNNA5726_VC_N_0834_Bis
37HB_403_NNNA5734_VC_N_0833
38HB_414_NNNA5772_VC_N_0832_Bis
39HB_416_NNNA5778_CR_N_0962
40HB_418_NNNA5789_PF_N_1273
41HB_421_NNNA5799_VC_N_1058
42HB_423_NNNA5803_VC_N_0966
43HB_426_NNNA5806_PF_N_1064
44HB_427_NNNA5810_CR_N_0636
45HB_431_NNNA5823_VC_N_0829
46HB_432_NNNA5826_VC_N_0828
47HB_433_NNNA5827_VC_N_0827
48HB_436_NNNA5832_PF_N_1145
49HB_443_NNNA5852_VC_N_0826
50HB_446_NNNA5859_VC_N_0825
51HB_449_NNNA5866_VC_N_0824
52HB_450_NNNA5867_VC_N_1277
53HB_453_NNNA5876_VC_N_0823
54HB_462_NNNA5903_VC_N_0822
55HB_464_NNNA5905_VC_N_0820
56HB_468_NNNA5912_VC_N_1286
57HB_472_NNNA5925_VC_N_1289
58HB_475_NNNA5936_VC_N_0979
59HB_476_NNNA5938_VC_N_0819
60HB_480_NNNA5946_VC_N_0985
61HB_485_NNNA5959_VC_N_0818
62HB_486_NNNA5963_VC_N_0987
63HB_495_NNNA5980_VC_N_0989
64HB_497_NNNA5985_VC_N_0990
65HB_500_NNNA5990_VC_N_0817
66HB_501_NNNA5991_VC_N_0816
67HB_504_NNNA5996_VC_N_0815
68HB_505_NNNA5998_VC_N_0814
69HB_507_NNNA6006_VC_N_0813
70HB_508_NNNA6007_CR_N_0618
71HB_509_NNNA6008_PF_N_1081
72HB_512_NNNA6023_PF_N_1155
73HB_516_NNNA6030_VC_N_0810
74HB_519_NNNA6034_VC_N_0809
75HB_532_NNNA6060_VC_N_1292
76HB_541_NNNA6092_VC_N_1001
77HB_542_NNNA6096_VC_N_0807
78HB_544_NNNA6101_CR_N_1161
79HB_547_NNNA6110_VC_N_1295
80HB_551_NNNA6124_VC_N_0806
81HB_557_NNNA6134_PF_N_1297
82HB_560_NNNA6142_VC_N_0805
83HB_569_NNNA6166_VC_N_0804
84HB_570_NNNA6170_VC_N_0803
85HB_572_NNNA6172_VC_N_1008
86HB_577_NNNA6182_VC_N_1166
87HB_579_NNNA6187_CR_N_0607
88HB_581_NNNA6191_VC_N_1010
89HB_584_NNNA6196_CR_N_0605
90HB_586_NNNA6200_VC_N_0799
91HB_587_NNNA6206_PF_N_1176
92HB_589_NNNA6213_VC_N_0798
93HB_601_NNNA6241_VC_N_0796
94HB_604_NNNA6260_VC_N_0794
95HB_609_NNNA6270_VC_N_0793
96HB_618_NNNA6289_VC_N_0791
97HB_622_NNNA6310_VC_N_0790
98HB_625_NNNA6314_VC_N_0789
99HB_637_NNNA6340_VC_N_0786
100HB_638_NNNA6341_VC_N_0785
101HB_640_NNNA6347_VC_N_0784
102HB_641_NNNA6356_VC_N_0783
103HB_643_NNNA6363_VC_N_0781
104HB_644_NNNA6366_VC_N_0780
105HB_645_NNNA6374_VC_N_0779
106HB_650_NNNA6384_VC_N_0777
107HB_651_NNNA6386_VC_N_0776
108HB_653_NNNA6388_VC_N_0775
109HB_659_NNNA6406_VC_N_1180
110HB_662_NNNA6411_VC_N_0771
111HB_663_NNNA6415_VC_N_0770
112HB_670_NNNA6436_VC_N_0769
113HB_687_NNNA6484_VC_N_0765
114HB_689_NNNA6486_VC_N_0764
115HB_694_NNNA6500_VC_N_0763
116HB_697_NNNA6512_VC_N_0762
117HB_700_NNNA6520_VC_N_0761
118HB_711_NNNA6543_PF_N_1191
119HB_714_NNNA6549_VC_N_1198
120HB_717_NNNA6553_PF_N_2284
121HB_721_NNNA6560_VC_N_2578
122HB_726_NNNA6573_PF_N_2293
123HB_730_NNNA6580_VC_N_2306
124HB_735_NNNA6588_VC_N_1213
125HB_737_NNNA6593_VC_N_1219
126HB_738_NNNA6594_VC_N_1222
127HB_759_NNNA6645_VC_N_1231
128HB_764_NNNA6655_VC_N_1240
129HB_765_NNNA6656_VC_N_1243
130HB_767_NNNA6661_PF_N_2341
131HB_770_NNNA6669_VC_N_1246
132HB_772_NNNA6676_PF_N_1248
133HB_001_HDHDF2028_CR_H_2282
134HB_003_HDHDF2685_PF_H_2212
135HB_004_HDHDM2706_CR_H_2432
136HB_006_HDHDM2737_VC_H_2194
137HB_007_HDHDNA2769_VC_H_2193
138HB_008_HDHDF2790_CR_H_1890
139HB_009_HDHDNA2879_VC_H_2192
140HB_010_HDHDM2960_VC_H_2002
141HB_011_HDHDF3053_VC_H_2001
142HB_012_HDHDF3128_VC_H_1999
143HB_014_HDHDF3149_PF_H_2110
144HB_015_HDHDF3150_VC_H_1996
145HB_016_HDHDF3177_VC_H_2191
146HB_017_HDHDNA3195_VC_H_2190
147HB_018_HDHDM3200_VC_H_2189
148HB_019_HDHDM3209_VC_H_2188
149HB_020_HDHDM3224_VC_H_1994
150HB_022_HDHDF3242_PF_H_2105
151HB_024_HDHDNA3272_VC_H_2186
152HB_027_HDHDM3356_VC_H_2439
153HB_028_HDHDF3394_PF_H_2104
154HB_031_HDHDM3430_VC_H_1990
155HB_032_HDHDNA3444_PF_H_2208
156HB_034_HDHDF3482_VC_H_1987
157HB_036_HDHDM3576_VC_H_1984
158HB_037_HDHDF3579_VC_H_1983
159HB_038_HDHDF3584_VC_H_2183
160HB_039_HDHDNA3635_VC_H_2182
161HB_041_HDHDF3695_CR_H_2267
162HB_042_HDHDM3697_VC_H_1982
163HB_043_HDHDNA3703_VC_H_2180
164HB_044_HDHDNA3723_VC_H_2179
165HB_046_HDHDF3735_VC_H_1981
166HB_050_HDHDM3820_PF_H_2207
167HB_051_HDHDF3849_CR_H_2262
168HB_054_HDHDM3884_VC_H_2175
169HB_056_HDHDNA4012_VC_H_2174
170HB_057_HDHDNA4013_VC_H_2173
171HB_059_HDHDNA4066_VC_H_2172
172HB_060_HDHDNA4094_VC_H_2171
173HB_061_HDHDF4116_VC_H_2170
174HB_062_HDHDNA4121_VC_H_2169
175HB_063_HDHDNA4215_VC_H_2167
176HB_065_HDHDM4340_PF_H_2091
177HB_066_HDHDF4344_VC_H_1977
178HB_067_HDHDM4346_VC_H_2165
179HB_069_HDHDF4356_VC_H_2164
180HB_070_HDHDNA4386_CR_H_2249
181HB_072_HDHDNA4404_VC_H_2161
182HB_073_HDHDF4411_VC_H_1975
183HB_074_HDHDNA4430_VC_H_2465
184HB_075_HDHDM4470_VC_H_1974
185HB_076_HDHDF4497_CR_H_1860
186HB_077_HDHDM4509_CR_H_2244
187HB_079_HDHDM4631_VC_H_1971
188HB_080_HDHDF4653_PF_H_2083
189HB_081_HDHDNA4678_CR_H_2242
190HB_084_HDHDM4718_VC_H_2125
191HB_090_HDHDNA4740_CR_H_2474
192HB_094_HDHDNA4754_CR_H_2476
193HB_098_HDHDNA4780_VC_H_2151
194HB_101_HDHDF4809_VC_H_2148
195HB_105_HDHDNA4819_CR_H_2238
196HB_106_HDHDF4822_VC_H_1969
197HB_108_HDHDM4826_VC_H_1968
198HB_109_HDHDM4828_VC_H_2124
199HB_115_HDHDNA4855_CR_H_2235
200HB_121_HDHDF4902_VC_H_1967
201HB_129_HDHDNA4938_VC_H_1966
202HB_141_HDHDF4996_PF_H_2076
203HB_152_HDHDNA5034_CR_H_2233
204HB_153_HDHDM5043_VC_H_1960
205HB_159_HDHDM5062_VC_H_1959
206HB_172_HDHDF5114_PF_H_2070
207HB_175_HDHDM5127_PF_H_2068
208HB_180_HDHDM5148_VC_H_1944
209HB_185_HDHDF5167_CR_H_2231
210HB_188_HDHDF5172_VC_H_1951
211HB_191_HDHDM5180_VC_H_1949
212HB_196_HDHDNA5199_PF_H_2202
213HB_203_HDHDF5228_PF_H_2059
214HB_207_HDHDNA5248_PF_H_2201
215HB_228_HDHDF5299_CR_H_2228
216HB_233_HDHDM5312_VC_H_1938
217HB_235_HDHDF5316_VC_H_1937
218HB_242_HDHDF5328_PF_H_2048
219HB_266_HDHDM5387_VC_H_1928
220HB_271_HDHDM5394_PF_H_2039
221HB_272_HDHDF5396_VC_H_1925
222HB_279_HDHDF5409_VC_H_1924
223HB_294_HDHDM5448_VC_H_1921
224HB_301_HDHDNA5464_VC_H_1919
225HB_304_HDHDF5471_VC_H_1918
226HB_321_HDHDNA5522_PF_H_2199
227HB_361_HDHDF5622_VC_H_2121
228HB_370_HDHDM5645_VC_H_1904
229HB_371_HDHDF5648_PF_H_2016
230HB_384_HDHDF5688_PF_H_2012
231HB_390_HDHDM5704_PF_H_2009
232HB_393_HDHDF5709_VC_H_1895
233HB_402_HDHDF5732_PF_H_2007
234HB_405_HDHDNA5742_PF_H_2006
235HB_407_HDHDM5745_PF_H_2005
236HB_408_HDHDM5747_VC_H_1891
237HB_415_HDHDNA5777_PF_H_1551
238HB_417_HDHDM5784_PF_H_1554
239HB_424_HDHDM5804_VC_H_1558
240HB_444_HDHDM5856_VC_H_1567
241HB_457_HDHDM5896_VC_H_1570
242HB_466_HDHDM5910_PF_H_1572
243HB_478_HDHDM5941_CR_H_1583
244HB_487_HDHDF5964_VC_H_1597
245HB_511_HDHDM6019_PF_H_2198
246HB_513_HDHDF6024_VC_H_1612
247HB_515_HDHDF6028_CR_H_1613
248HB_518_HDHDM6033_VC_H_1618
249HB_522_HDHDM6037_PF_H_1626
250HB_527_HDHDF6047_VC_H_1639
251HB_528_HDHDM6051_PF_H_1641
252HB_530_HDHDM6054_VC_H_1648
253HB_537_HDHDF6071_PF_H_1653
254HB_549_HDHDM6119_CR_H_1670
255HB_593_HDHDNA6219_CR_H_2567
256HB_610_HDHDNA6275_PF_H_1692
257HB_616_HDHDF6284_CR_H_1694
258HB_626_HDHDM6315_VC_H_1702
259HB_639_HDHDF6344_CR_H_1703
260HB_649_HDHDF6382_CR_H_1709
261HB_661_HDHDM6408_VC_H_1714
262HB_682_HDHDM6467_PF_H_1725
263HB_683_HDHDM6472_VC_H_1729
264HB_691_HDHDF6493_VC_H_1732
265HB_692_HDHDM6495_CR_H_1733
266HB_707_HDHDM6535_PF_H_1737
267HB_709_HDHDF6539_CR_H_1739
268HB_725_HDHDM6572_PF_H_1746
269HB_732_HDHDF6584_VC_H_1750
270HB_734_HDHDF6587_CR_H_1751
271HB_748_HDHDNA6615_VC_H_2315
272HB_750_HDHDNA6628_PF_H_2326
273HB_758_HDHDNA6643_VC_H_2602
274HB_760_HDHDM6646_PF_H_1761
275HB_762_HDHDM6650_VC_H_1765
276HB_766_HDHDM6658_VC_H_1768
277HB_768_HDHDNA6663_VC_H_1771
278HB_769_HDHDM6666_VC_H_1774
279HB_774_HDHDNA6689_PF_H_2344
280HB_778_HDHDNA6696_PF_H_2356
281HB_780_HDHDNA6704_PF_H_2362
282HB_790_HDHDNA6788_PF_H_2389
283HB_800_HDHDNA6807_PF_H_2419
284HB_802_HDHDNA6811_PF_H_2425
285HB_045_ADADNA3734_CR_A_0122
286HB_048_ADADNA3791_CR_A_0128
287HB_053_ADADNA3877_CR_A_0134
288HB_055_ADADNA3893_VC_A_0142
289HB_068_ADADNA4349_VC_A_0148
290HB_082_ADADNA4712_CR_A_0309
291HB_085_ADADNA4726_VC_A_0311
292HB_087_ADADNA4730_CR_A_0315
293HB_089_ADADNA4733_VC_A_0320
294HB_093_ADADNA4749_VC_A_0323
295HB_095_ADADNA4759_CR_A_0327
296HB_097_ADADNA4773_CR_A_0866
297HB_099_ADADNA4785_VC_A_0332
298HB_100_ADADNA4795_VC_A_0335
299HB_103_ADADNA4811_VC_A_0341
300HB_104_ADADNA4813_CR_A_0345
301HB_112_ADADNA4842_VC_A_0870
302HB_113_ADADNA4850_CR_A_0351
303HB_114_ADADNA4852_CR_A_0354
304HB_117_ADADNA4868_VC_A_0874
305HB_122_ADADNA4904_CR_A_1132
306HB_123_ADADNA4905_VC_A_0884
307HB_124_ADADNA4916_VC_A_0886
308HB_125_ADADNA4917_CR_A_0360
309HB_126_ADADNA4921_VC_A_0362
310HB_128_ADADNA4936_CR_A_0369
311HB_130_ADADNA4939_VC_A_0888
312HB_131_ADADNA4944_CR_A_0889
313HB_132_ADADNA4946_CR_A_0372
314HB_134_ADADNA4951_CR_A_0891
315HB_135_ADADNA4953_VC_A_0893
316HB_136_ADADNA4965_VC_A_0160
317HB_137_ADADNA4966_VC_A_0374
318HB_138_ADADNA4969_VC_A_0895
319HB_140_ADADNA4993_CR_A_0896
320HB_146_ADADNA5018_CR_A_0384
321HB_148_ADADNA5022_VC_A_0386
322HB_150_ADADNA5031_VC_A_0392
323HB_151_ADADNA5033_CR_A_0396
324HB_154_ADADNA5048_VC_A_1321
325HB_155_ADADNA5056_VC_A_0398
326HB_156_ADADNA5057_VC_A_0163
327HB_157_ADADNA5059_VC_A_0401
328HB_158_ADADNA5061_PF_A_2612
329HB_160_ADADNA5064_PF_A_2615
330HB_165_ADADNA5092_CR_A_0899
331HB_168_ADADNA5097_VC_A_0407
332HB_170_ADADNA5101_VC_A_0410
333HB_174_ADADNA5124_PF_A_1343
334HB_179_ADADNA5145_VC_A_1351
335HB_181_ADADNA5152_CR_A_0414
336HB_184_ADADNA5166_VC_A_1354
337HB_194_ADADNA5193_VC_A_1360
338HB_197_ADADNA5202_CR_A_1368
339HB_199_ADADNA5205_VC_A_0166
340HB_200_ADADNA5210_VC_A_0905
341HB_205_ADADNA5235_VC_A_0419
342HB_208_ADADNA5249_VC_A_0422
343HB_209_ADADNA5252_VC_A_0907
344HB_211_ADADNA5257_VC_A_0169
345HB_216_ADADNA5272_VC_A_0425
346HB_219_ADADNA5279_CR_A_0147
347HB_221_ADADNA5283_VC_A_0145
348HB_222_ADADNA5285_VC_A_0141
349HB_224_ADADNA5288_VC_A_0428
350HB_230_ADADNA5301_VC_A_0174
351HB_231_ADADNA5305_VC_A_1384
352HB_232_ADADNA5310_CR_A_0176
353HB_234_ADADNA5313_PF_A_2618
354HB_236_ADADNA5317_PF_A_2624
355HB_238_ADADNA5322_CR_A_2632
356HB_240_ADADNA5325_VC_A_0137
357HB_244_ADADNA5337_VC_A_1387
358HB_245_ADADNA5339_VC_A_0181
359HB_250_ADADNA5346_VC_A_1393
360HB_251_ADADNA5350_VC_A_0184
361HB_252_ADADNA5355_VC_A_0133
362HB_253_ADADNA5359_CR_A_1395
363HB_258_ADADNA5370_PF_A_1400
364HB_259_ADADNA5371_PF_A_2636
365HB_260_ADADNA5375_VC_A_0188
366HB_263_ADADNA5381_VC_A_0022
367HB_265_ADADNA5385_VC_A_1402
368HB_267_ADADNA5389_VC_A_0928
369HB_268_ADADNA5390_CR_A_0151
370HB_273_ADADNA5400_PF_A_2645
371HB_274_ADADNA5401_VC_A_0931
372HB_275_ADADNA5404_PF_A_2648
373HB_276_ADADNA5406_VC_A_0933
374HB_277_ADADNA5407_PF_A_2651
375HB_280_ADADNA5412_VC_A_0935
376HB_281_ADADNA5413_PF_A_2657
377HB_283_ADADNA5419_VC_A_0937
378HB_284_ADADNA5420_VC_A_0939
379HB_285_ADADNA5421_CR_A_0432
380HB_286_ADADNA5423_PF_A_2660
381HB_288_ADADNA5425_PF_A_2666
382HB_289_ADADNA5426_VC_A_1405
383HB_290_ADADNA5433_VC_A_0434
384HB_296_ADADNA5456_PF_A_2675
385HB_299_ADADNA5461_VC_A_0192
386HB_302_ADADNA5465_PF_A_2678
387HB_303_ADADNA5469_VC_A_1417
388HB_305_ADADNA5479_PF_A_1421
389HB_306_ADADNA5480_VC_A_0437
390HB_307_ADADNA5482_VC_A_0028
391HB_308_ADADNA5483_VC_A_0941
392HB_309_ADADNA5487_CR_A_0441
393HB_310_ADADNA5488_CR_A_0194
394HB_312_ADADNA5500_VC_A_0198
395HB_313_ADADNA5502_PF_A_2684
396HB_315_ADADNA5513_PF_A_2687
397HB_316_ADADNA5516_PF_A_2690
398HB_317_ADADNA5517_PF_A_2693
399HB_318_ADADNA5518_CR_A_0030
400HB_319_ADADNA5519_CR_A_2695
401HB_320_ADADNA5520_PF_A_2699
402HB_322_ADADNA5527_VC_A_0945
403HB_325_ADADNA5532_PF_A_2702
404HB_328_ADADNA5541_PF_A_2705
405HB_330_ADADNA5544_VC_A_0201
406HB_334_ADADNA5554_VC_A_0452
407HB_335_ADADNA5557_VC_A_0950
408HB_337_ADADNA5560_VC_A_0204
409HB_342_ADADNA5571_PF_A_1430
410HB_345_ADADNA5583_PF_A_2708
411HB_347_ADADNA5589_PF_A_2714
412HB_349_ADADNA5592_PF_A_2717
413HB_352_ADADNA5604_VC_A_0037
414HB_353_ADADNA5607_PF_A_2723
415HB_356_ADADNA5615_VC_A_0041
416HB_357_ADADNA5616_CR_A_0127
417HB_358_ADADNA5617_CR_A_0456
418HB_359_ADADNA5618_CR_A_0044
419HB_362_ADADNA5625_CR_A_2495
420HB_363_ADADNA5626_CR_A_2498
421HB_364_ADADNA5629_CR_A_0390
422HB_369_ADADNA5643_VC_A_1143
423HB_373_ADADNA5654_VC_A_0047
424HB_375_ADADNA5660_CR_A_0462
425HB_376_ADADNA5661_VC_A_0464
426HB_377_ADADNA5667_VC_A_2509
427HB_378_ADADNA5668_VC_A_1438
428HB_383_ADADNA5686_CR_A_2728
429HB_386_ADADNA5695_VC_A_0953
430HB_389_ADADNA5700_VC_A_2514
431HB_391_ADADNA5705_CR_A_0474
432HB_392_ADADNA5706_VC_A_0476
433HB_394_ADADNA5713_VC_A_0479
434HB_397_ADADNA5721_CR_A_0210
435HB_404_ADADNA5735_CR_A_0489
436HB_406_ADADNA5744_CR_A_0960
437HB_409_ADADNA5749_CR_A_0159
438HB_410_ADADNA5751_CR_A_2518
439HB_411_ADADNA5755_CR_A_2731
440HB_413_ADADNA5766_VC_A_0214
441HB_419_ADADNA5790_VC_A_0217
442HB_420_ADADNA5796_CR_A_0964
443HB_428_ADADNA5811_CR_A_2524
444HB_429_ADADNA5819_CR_A_2527
445HB_430_ADADNA5822_CR_A_2530
446HB_434_ADADNA5828_CR_A_2533
447HB_435_ADADNA5831_CR_A_0222
448HB_437_ADADNA5839_CR_A_2539
449HB_438_ADADNA5843_CR_A_0227
450HB_439_ADADNA5845_CR_A_0230
451HB_441_ADADNA5849_CR_A_0233
452HB_442_ADADNA5850_CR_A_0495
453HB_445_ADADNA5858_CR_A_0969
454HB_448_ADADNA5864_CR_A_0974
455HB_451_ADADNA5871_CR_A_2542
456HB_454_ADADNA5879_CR_A_2545
457HB_455_ADADNA5887_CR_A_0976_Bis
458HB_459_ADADNA5898_CR_A_2548
459HB_460_ADADNA5900_VC_A_0237
460HB_461_ADADNA5901_CR_A_0239
461HB_469_ADADNA5914_CR_A_2554
462HB_471_ADADNA5922_VC_A_0246
463HB_473_ADADNA5927_CR_A_2560
464HB_474_ADADNA5933_VC_A_1071
465HB_477_ADADNA5939_CR_A_1151
466HB_479_ADADNA5945_VC_A_0983
467HB_484_ADADNA5956_CR_A_0123
468HB_489_ADADNA5968_VC_A_1075
469HB_491_ADADNA5971_CR_A_0119
470HB_492_ADADNA5972_VC_A_0251
471HB_494_ADADNA5979_CR_A_0115
472HB_498_ADADNA5988_VC_A_0503
473HB_502_ADADNA5994_PF_A_1605
474HB_503_ADADNA5995_CR_A_2563
475HB_510_ADADNA6017_CR_A_0048
476HB_514_ADADNA6025_VC_A_0506
477HB_517_ADADNA6031_VC_A_0258
478HB_520_ADADNA6035_VC_A_1621
479HB_523_ADADNA6038_VC_A_0261
480HB_524_ADADNA6042_VC_A_1156
481HB_525_ADADNA6044_VC_A_0264
482HB_531_ADADNA6056_CR_A_0999
483HB_533_ADADNA6061_PF_A_1650
484HB_534_ADADNA6066_VC_A_0270
485HB_535_ADADNA6067_PF_A_1452
486HB_536_ADADNA6068_VC_A_0273
487HB_545_ADADNA6102_CR_A_1661
488HB_546_ADADNA6107_CR_A_0055
489HB_550_ADADNA6120_VC_A_0058
490HB_552_ADADNA6126_VC_A_1675
491HB_553_ADADNA6129_PF_A_0274
492HB_554_ADADNA6130_VC_A_1678
493HB_555_ADADNA6131_CR_A_0510
494HB_556_ADADNA6132_CR_A_0513
495HB_558_ADADNA6137_VC_A_1681
496HB_564_ADADNA6153_VC_A_1465
497HB_565_ADADNA6154_VC_A_1468
498HB_566_ADADNA6157_VC_A_0062
499HB_568_ADADNA6164_CR_A_1005
500HB_571_ADADNA6171_CR_A_0065
501HB_573_ADADNA6174_VC_A_0068
502HB_576_ADADNA6180_CR_A_0281
503HB_583_ADADNA6194_VC_A_0071
504HB_585_ADADNA6198_VC_A_0073
505HB_590_ADADNA6215_VC_A_0518
506HB_591_ADADNA6216_VC_A_1476
507HB_592_ADADNA6218_CR_A_0522
508HB_594_ADADNA6223_VC_A_0288
509HB_596_ADADNA6226_CR_A_0076
510HB_597_ADADNA6227_VC_A_0080
511HB_598_ADADNA6231_VC_A_1479
512HB_605_ADADNA6261_VC_A_0084
513HB_608_ADADNA6268_CR_A_0525
514HB_611_ADADNA6279_VC_A_0089
515HB_612_ADADNA6280_VC_A_0091
516HB_613_ADADNA6281_CR_A_0528
517HB_621_ADADNA6308_VC_A_1503
518HB_623_ADADNA6311_CR_A_0531
519HB_624_ADADNA6312_CR_A_0534
520HB_630_ADADNA6324_PF_A_1514
521HB_633_ADADNA6332_VC_A_1518
522HB_634_ADADNA6335_VC_A_0536
523HB_635_ADADNA6336_CR_A_0290
524HB_636_ADADNA6338_VC_A_0539
525HB_642_ADADNA6358_VC_A_0545
526HB_652_ADADNA6387_VC_A_0093
527HB_657_ADADNA6394_VC_A_0551
528HB_664_ADADNA6416_VC_A_1095
529HB_666_ADADNA6422_CR_A_0555
530HB_669_ADADNA6431_VC_A_0294
531HB_674_ADADNA6449_VC_A_1183
532HB_680_ADADNA6458_CR_A_2570
533HB_685_ADADNA6481_VC_A_0560
534HB_690_ADADNA6489_CR_A_0100
535HB_696_ADADNA6511_VC_A_1119
536HB_698_ADADNA6515_CR_A_0564
537HB_699_ADADNA6518_VC_A_0103
538HB_703_ADADNA6523_VC_A_0107
539HB_704_ADADNA6530_VC_A_0112
540HB_706_ADADNA6534_VC_A_0306
541HB_712_ADADNA6546_PF_A_1194
542HB_713_ADADNA6548_PF_A_1541
543HB_715_ADADNA6550_VC_A_1201
544HB_718_ADADNA6554_PF_A_1203
545HB_720_ADADNA6559_PF_A_2287
546HB_722_ADADNA6561_CR_A_2582
547HB_723_ADADNA6562_PF_A_2290
548HB_724_ADADNA6564_CR_A_2585
549HB_727_ADADNA6575_CR_A_2298
550HB_728_ADADNA6577_PF_A_2299
551HB_729_ADADNA6578_PF_A_2302
552HB_731_ADADNA6582_VC_A_1207
553HB_733_ADADNA6585_VC_A_1210
554HB_736_ADADNA6590_PF_A_1215
555HB_743_ADADNA6603_PF_A_1448
556HB_745_ADADNA6610_PF_A_1227
557HB_746_ADADNA6612_PF_A_2308
558HB_749_ADADNA6617_VC_A_2587
559HB_751_ADADNA6629_VC_A_2330
560HB_752_ADADNA6630_VC_A_2590
561HB_753_ADADNA6632_PF_A_2332
562HB_754_ADADNA6637_VC_A_2596
563HB_755_ADADNA6638_VC_A_2599
564HB_756_ADADNA6639_VC_A_2336
565HB_757_ADADNA6641_PF_A_2338
566HB_763_ADADNA6654_VC_A_1237
567HB_773_ADADNA6681_VC_A_1252
568HB_775_ADADNA6693_VC_A_2348
569HB_776_ADADNA6694_VC_A_2351
570HB_777_ADADNA6695_PF_A_2353
571HB_779_ADADNA6699_PF_A_2359
572HB_781_ADADNA6708_VC_A_2366
573HB_782_ADADNA6776_PF_A_2607
574HB_783_ADADNA6778_PF_A_2368
575HB_784_ADADNA6779_PF_A_2371
576HB_785_ADADNA6780_PF_A_2374
577HB_786_ADADNA6782_PF_A_2377
578HB_787_ADADNA6784_PF_A_2380
579HB_788_ADADNA6785_CR_A_2385
580HB_789_ADADNA6787_CR_A_2388
581HB_791_ADADNA6790_PF_A_2392
582HB_792_ADADNA6791_PF_A_2395
583HB_793_ADADNA6793_PF_A_2398
584HB_794_ADADNA6794_PF_A_2401
585HB_795_ADADNA6797_PF_A_2404
586HB_796_ADADNA6798_PF_A_2407
587HB_797_ADADNA6799_VC_A_2411
588HB_798_ADADNA6801_VC_A_2414
589HB_799_ADADNA6803_VC_A_2417
590HB_801_ADADNA6809_PF_A_2422
591HB_803_ADADNA6818_CR_A_2430
+
diff --git a/general/datasets/HBTRC-MLPFC_HD_0611/experiment-design.rtf b/general/datasets/HBTRC-MLPFC_HD_0611/experiment-design.rtf new file mode 100644 index 0000000..4ee3070 --- /dev/null +++ b/general/datasets/HBTRC-MLPFC_HD_0611/experiment-design.rtf @@ -0,0 +1 @@ +

See PMID: 25080494

diff --git a/general/datasets/HBTRC-MLPFC_HD_0611/notes.rtf b/general/datasets/HBTRC-MLPFC_HD_0611/notes.rtf new file mode 100644 index 0000000..ff90e34 --- /dev/null +++ b/general/datasets/HBTRC-MLPFC_HD_0611/notes.rtf @@ -0,0 +1,6 @@ +

Species: Human
+Tissue: Brain visual cortex,Brain cerebellum,Brain prefrontal cortex
+Disease: Neurological Disease
+Investigator: Francine Benes/ Eric Schadt
+Institution: Harvard Brain Tissue Resource Center/ Merck Research Laboratories
+Approximate Number Subjects: 803

diff --git a/general/datasets/HBTRC-MLPFC_HD_0611/platform.rtf b/general/datasets/HBTRC-MLPFC_HD_0611/platform.rtf new file mode 100644 index 0000000..4ee3070 --- /dev/null +++ b/general/datasets/HBTRC-MLPFC_HD_0611/platform.rtf @@ -0,0 +1 @@ +

See PMID: 25080494

diff --git a/general/datasets/HBTRC-MLPFC_HD_0611/processing.rtf b/general/datasets/HBTRC-MLPFC_HD_0611/processing.rtf new file mode 100644 index 0000000..4ee3070 --- /dev/null +++ b/general/datasets/HBTRC-MLPFC_HD_0611/processing.rtf @@ -0,0 +1 @@ +

See PMID: 25080494

diff --git a/general/datasets/HBTRC-MLPFC_HD_0611/summary.rtf b/general/datasets/HBTRC-MLPFC_HD_0611/summary.rtf new file mode 100644 index 0000000..5cde3bf --- /dev/null +++ b/general/datasets/HBTRC-MLPFC_HD_0611/summary.rtf @@ -0,0 +1 @@ +

This study aims at identifying functional variation in the human genome (especially as it pertains to brain expressed RNAs) and elucidate its relationship to disease and drug response. The ~800 individuals in this dataset are composed of approximately 400 Alzheimers disease (AD) cases, 230 Huntington's Disease (HD) and 170 controls (N) matched for age, gender, and post mortem interval (PMI). The tissue specimens for this study were provided by Harvard Brain Tissue Resource Center (HBTRC). Three brain regions (cerebellum, visual cortex, and dorsolateral prefrontal cortex) from the same individuals were profiled on a custom-made Agilent 44K microarray of 39,280 DNA probes uniquely targeting 37,585 known and predicted genes, including splice variants, miRNAs and high-confidence non-coding RNA sequences. The individuals were genotyped on two different platforms, the Illumina HumanHap650Y array and a custom Perlegen 300K array (a focused panel for detection of singleton SNPs). Clinical outcomes available include age at onset, age at death, Braak scores (AD), Vonsattel scores (HD), Regional brain enlargement/atrophy.

diff --git a/general/datasets/HBTRC-MLPFC_HD_0611/tissue.rtf b/general/datasets/HBTRC-MLPFC_HD_0611/tissue.rtf new file mode 100644 index 0000000..4ee3070 --- /dev/null +++ b/general/datasets/HBTRC-MLPFC_HD_0611/tissue.rtf @@ -0,0 +1 @@ +

See PMID: 25080494

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