From b2feda451ccfbeaed02dce9088d6dd228cf15861 Mon Sep 17 00:00:00 2001 From: Bonface Date: Tue, 13 Feb 2024 23:52:26 -0600 Subject: Update dataset RTF Files. --- .../Genex_bxd_liveret_rma_m_0211/notes.rtf | 3 +++ .../Genex_bxd_liveret_rma_m_0211/summary.rtf | 29 ++++++++++++++++++++++ 2 files changed, 32 insertions(+) create mode 100644 general/datasets/Genex_bxd_liveret_rma_m_0211/notes.rtf create mode 100644 general/datasets/Genex_bxd_liveret_rma_m_0211/summary.rtf (limited to 'general/datasets/Genex_bxd_liveret_rma_m_0211') diff --git a/general/datasets/Genex_bxd_liveret_rma_m_0211/notes.rtf b/general/datasets/Genex_bxd_liveret_rma_m_0211/notes.rtf new file mode 100644 index 0000000..3c8d261 --- /dev/null +++ b/general/datasets/Genex_bxd_liveret_rma_m_0211/notes.rtf @@ -0,0 +1,3 @@ +

A total of 239 probe sets have LRS >46. Maximum LRS of 124.5. Perfect concordance between phenotype of probe set and genotype for St3gal4 on Chr 9 at 34.9 Mb.

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Xist expression is uniformly high in BXD55 and BXD70 using probe set 1427262_at, but this is probably due to ethanol effect. Note that Eif2s3y indicates all strains have balanced male and female data.

diff --git a/general/datasets/Genex_bxd_liveret_rma_m_0211/summary.rtf b/general/datasets/Genex_bxd_liveret_rma_m_0211/summary.rtf new file mode 100644 index 0000000..60d23d4 --- /dev/null +++ b/general/datasets/Genex_bxd_liveret_rma_m_0211/summary.rtf @@ -0,0 +1,29 @@ +

These data generated by Dr. Robert Rooney, Kristin Hamre, Divyen Patel, and colleagues at Genome Explorations as part of an SBIR from NIAAA (2010-2011).

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Data entered by Arthur Centeno, Jan and Feb 2011.

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Data error checked by Robert W. Williams, Jan-May 2011.

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eQTLs with LOD > 10

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    +
  1. UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females: 303
    2. +
  2. UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males: 279
    3. +
  3. UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes: 493
    4. +
  4. GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females: 320
    5. +
  5. GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males: 207
    6. +
  6. GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes: 513
    7. +
  7. GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females: 189
    8. +
  8. GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males: 97
    9. +
  9. GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes: 327
    10. +
  10. GenEx BXD Sal Liver Affy M430 2.0 (Jan11) RMA Females: 274
    11. +
  11. GenEx BXD Sal Liver Affy M430 2.0 (Jan11) RMA Males: 175
    12. +
  12. GenEx BXD Sal Liver Affy M430 2.0 (Jan11) RMA Both Sexes: 444
    13. +
  13. GenEx BXD EtOH Liver Affy M430 2.0 (Jan11) RMA Females: 139
    14. +
  14. GenEx BXD EtOH Liver Affy M430 2.0 (Jan11) RMA Males: 73
    15. +
  15. GenEx BXD EtOH Liver Affy M430 2.0 (Jan11) RMA Both Sexes: 230
    16. +
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