From e34e7da50fc0ff5ed41e8bdaf2b1d41c9e9cf534 Mon Sep 17 00:00:00 2001 From: Bonface Date: Thu, 15 Feb 2024 06:09:54 -0600 Subject: Update dataset RTF Files. --- .../datasets/GenEx_BXD_liverEt_M5M_0912/notes.rtf | 3 --- .../GenEx_BXD_liverEt_M5M_0912/summary.rtf | 29 ---------------------- 2 files changed, 32 deletions(-) delete mode 100644 general/datasets/GenEx_BXD_liverEt_M5M_0912/notes.rtf delete mode 100644 general/datasets/GenEx_BXD_liverEt_M5M_0912/summary.rtf (limited to 'general/datasets/GenEx_BXD_liverEt_M5M_0912') diff --git a/general/datasets/GenEx_BXD_liverEt_M5M_0912/notes.rtf b/general/datasets/GenEx_BXD_liverEt_M5M_0912/notes.rtf deleted file mode 100644 index 3c8d261..0000000 --- a/general/datasets/GenEx_BXD_liverEt_M5M_0912/notes.rtf +++ /dev/null @@ -1,3 +0,0 @@ -

A total of 239 probe sets have LRS >46. Maximum LRS of 124.5. Perfect concordance between phenotype of probe set and genotype for St3gal4 on Chr 9 at 34.9 Mb.

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Xist expression is uniformly high in BXD55 and BXD70 using probe set 1427262_at, but this is probably due to ethanol effect. Note that Eif2s3y indicates all strains have balanced male and female data.

diff --git a/general/datasets/GenEx_BXD_liverEt_M5M_0912/summary.rtf b/general/datasets/GenEx_BXD_liverEt_M5M_0912/summary.rtf deleted file mode 100644 index 60d23d4..0000000 --- a/general/datasets/GenEx_BXD_liverEt_M5M_0912/summary.rtf +++ /dev/null @@ -1,29 +0,0 @@ -

These data generated by Dr. Robert Rooney, Kristin Hamre, Divyen Patel, and colleagues at Genome Explorations as part of an SBIR from NIAAA (2010-2011).

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Data entered by Arthur Centeno, Jan and Feb 2011.

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Data error checked by Robert W. Williams, Jan-May 2011.

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eQTLs with LOD > 10

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  1. UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females: 303
    2. -
  2. UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males: 279
    3. -
  3. UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes: 493
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  4. GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females: 320
    5. -
  5. GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males: 207
    6. -
  6. GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes: 513
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  7. GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females: 189
    8. -
  8. GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males: 97
    9. -
  9. GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes: 327
    10. -
  10. GenEx BXD Sal Liver Affy M430 2.0 (Jan11) RMA Females: 274
    11. -
  11. GenEx BXD Sal Liver Affy M430 2.0 (Jan11) RMA Males: 175
    12. -
  12. GenEx BXD Sal Liver Affy M430 2.0 (Jan11) RMA Both Sexes: 444
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  13. GenEx BXD EtOH Liver Affy M430 2.0 (Jan11) RMA Females: 139
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  14. GenEx BXD EtOH Liver Affy M430 2.0 (Jan11) RMA Males: 73
    15. -
  15. GenEx BXD EtOH Liver Affy M430 2.0 (Jan11) RMA Both Sexes: 230
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