From b2feda451ccfbeaed02dce9088d6dd228cf15861 Mon Sep 17 00:00:00 2001 From: Bonface Date: Tue, 13 Feb 2024 23:52:26 -0600 Subject: Update dataset RTF Files. --- general/datasets/Cb_m_0104_r/tissue.rtf | 376 ++++++++++++++++++++++++++++++++ 1 file changed, 376 insertions(+) create mode 100644 general/datasets/Cb_m_0104_r/tissue.rtf (limited to 'general/datasets/Cb_m_0104_r/tissue.rtf') diff --git a/general/datasets/Cb_m_0104_r/tissue.rtf b/general/datasets/Cb_m_0104_r/tissue.rtf new file mode 100644 index 0000000..4f8e5ed --- /dev/null +++ b/general/datasets/Cb_m_0104_r/tissue.rtf @@ -0,0 +1,376 @@ +
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The October 2003 data set was processed in two large batches. The first batch (the May 2003 data set) consists of 20 pooled samples from 20 strains run on pairs of Affymetrix 430A and 430B arrays (40 arrays total). The second batch consists of 29 samples, included may biological replicates, 2 technical replicates, and data for 9 new strains. Each individual array experiment involved a pool of whole cerebellum taken from three adult animals of the same age and sex. The age range may look broad, but translated into human terms corresponds to a range from about 20 years to 50 years.

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RNA was extracted at UTHSC by Zhiping Jia and Hongtao Zhai.

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All samples were subsequently processed at the Hartwell Center Affymetrix laboratory at SJCRH by Jay Morris.

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The January04 data were processed in two large batches. The first batch (the May03 data set) consisted of samples from 20 samples and 20 strains run on Affymetrix MOE 430A and MOE430B GeneChip pairs (40 arrays total). The second batch of 29 samples, included may biological replicates, 2 technical replicates, and data for 9 new strains. Each individual array experiment involved a pool of brain tissue (intact whole cerebellum) taken from three adult animals usually of the same age. RNA was extracted at UTHSC and all samples were processed at the Hartwell Center (SJCRH, Memphis). We will eventually achieve a sample with good, but not perfect, balance of samples by sex and age. The age range may look broad, but translated into human terms corresponds to a range from about 20 years to 50 years.
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The table below summarizes informaton on strain, sex, age, sample name, and batch number.
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StrainSexAgeSampleIDBatch
B6D2F1M127766-C12
B6D2F1M94S347-1C11
C57BL/6JF116773-C12
C57BL/6JM109S054-1C21
DBA/2JF71S175-1C11
DBA/2JF91782-C12
BXD1F57813-C12
BXD2F142751-C11
BXD2F78774-C12
BXD5F56802-C12
BXD5M71752-C11
BXD6F92719-C11
BXD8F72S173-1C11
BXD9M86737-C11
BXD11F441S200-1C11
BXD11M92790-C12
BXD12F130776-C12
BXD12M64756-C12
BXD14F190794-C12
BXD14M91758-C12
BXD16F163750-C11
BXD19F61772-C12
BXD21F116711-C11
BXD21M64803-C12
BXD22F65S174-1C11
BXD23F88814-C12
BXD24F71805-C12
BXD24M71759-C12
BXD25M90S429-1C11
BXD28F113785-C12
BXD28F427S203-1C11
BXD29F82777-C12
BXD29M76714-C12
BXD29M76714-C11
BXD31F142816-C12
BXD32F62778-C12
BXD32M218786-C12
BXD33F184793-C12
BXD33M124715-C11
BXD34F56725-C11
BXD34M91789-C12
BXD38F55781-C12
BXD38M65761-C12
BXD39M165723-C11
BXD40F56718-C11
BXD40F56718-C12
BXD40M73812-C12
BXD42F100799-C12
BXD42M97709-C11
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