From e34e7da50fc0ff5ed41e8bdaf2b1d41c9e9cf534 Mon Sep 17 00:00:00 2001 From: Bonface Date: Thu, 15 Feb 2024 06:09:54 -0600 Subject: Update dataset RTF Files. --- general/datasets/BR_M2_1106_R/tissue.rtf | 2751 ------------------------------ 1 file changed, 2751 deletions(-) delete mode 100644 general/datasets/BR_M2_1106_R/tissue.rtf (limited to 'general/datasets/BR_M2_1106_R/tissue.rtf') diff --git a/general/datasets/BR_M2_1106_R/tissue.rtf b/general/datasets/BR_M2_1106_R/tissue.rtf deleted file mode 100644 index 0989cd0..0000000 --- a/general/datasets/BR_M2_1106_R/tissue.rtf +++ /dev/null @@ -1,2751 +0,0 @@ -
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Naïve male mice were euthanized by CO2 exposure, and whole brains were removed and frozen on dry ice. Brains were stored at -70 deg C until used. The RNeasy Midi kit for lipid-rich tissues (Qiagen, Valencia, CA) was used to extract total RNA, and the RNeasy Mini kit (Qiagen) was used for cleanup. Biotin-labeled cRNA was obtained by in vitro transcription of the double-stranded cDNA that was originally synthesized from the total RNA. Each whole brain sample of biotin-labeled cRNA was fragmented and hybridized to a separate oligonucleotide array. After hybridization, the chips were stained with streptavidin-phycoerythrin conjugate and scanned using an Affymetrix GeneArray scanner.

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StrainSample NumberScale
- factor		Average
- background		AbsentMarginalPresentAffy-bActinAffy-GAPH
BXD110.34365.5745.5%4.1%50.4%1.330.74
BXD120.36268.2646.9%4.5%48.6%1.300.76
BXD130.37566.1946.9%4.2%48.9%1.270.77
BXD140.40857.1645.0%4.0%51.1%1.270.80
BXD210.27060.5344.0%4.1%51.8%1.520.87
BXD220.28067.5745.0%4.2%50.8%1.310.75
BXD230.29567.0345.2%4.1%50.7%1.340.76
BXD240.20999.8650.0%4.7%45.3%1.240.73
BXD250.24673.2846.2%4.3%49.5%1.340.73
BXD510.24975.3447.3%4.4%48.3%1.340.73
BXD520.30670.1147.5%4.5%47.9%1.310.77
BXD530.26564.8044.8%4.3%50.9%1.330.74
BXD540.28266.0445.5%4.2%50.4%1.410.76
BXD550.21671.8746.0%3.9%50.1%3.071.01
BXD610.29466.7245.8%4.3%49.9%1.380.75
BXD620.30462.8345.8%4.2%50.0%1.250.72
BXD630.30161.8045.3%4.3%50.5%1.270.76
BXD650.27367.0444.4%4.2%51.4%1.320.76
BXD660.27266.3945.4%4.3%50.3%1.320.75
BXD810.20781.9044.0%3.9%52.1%1.330.74
BXD820.25470.1944.0%3.9%52.0%1.320.72
BXD830.30072.6146.0%4.0%50.0%1.300.74
BXD840.45752.6339.5%3.3%57.2%1.140.79
BXD850.38155.0941.2%3.4%55.4%1.120.79
BXD910.34990.3248.5%4.1%47.4%1.380.78
BXD920.24186.6651.2%4.8%44.0%1.380.75
BXD930.28467.2147.2%4.3%48.5%1.330.78
BXD940.30364.4746.9%4.5%48.6%1.320.77
BXD950.35159.4047.4%4.4%48.2%1.410.80
BXD960.31263.4146.3%4.4%49.4%1.390.76
BXD1110.26761.8544.6%4.3%51.1%1.360.75
BXD1120.31763.7645.3%4.3%50.4%1.290.79
BXD1130.30659.3544.8%4.2%51.0%1.330.79
BXD1140.22398.8451.1%4.6%44.3%1.320.73
BXD1150.29265.0345.4%4.0%50.5%1.380.78
BXD1210.35754.5042.5%3.7%53.8%1.150.76
BXD1220.37955.0542.7%3.7%53.6%1.150.76
BXD1230.34756.3443.2%3.9%52.9%1.170.74
BXD1240.54165.1643.1%3.4%53.6%1.080.79
BXD1250.17896.0443.4%4.0%52.7%1.290.74
BXD1260.23467.3243.0%3.9%53.0%1.310.75
BXD1270.25568.4142.7%4.2%53.2%1.500.76
BXD1310.28559.5145.8%4.2%49.9%1.220.75
BXD1320.27567.1944.9%4.2%50.9%1.290.76
BXD1330.27766.0545.7%4.2%50.2%1.380.79
BXD1340.21482.7348.6%4.5%46.9%1.400.78
BXD1350.23771.7346.0%4.3%49.7%1.290.77
BXD1360.30857.5847.2%4.2%48.6%1.330.74
BXD1420.37258.4246.8%4.4%48.8%1.190.74
BXD1430.35457.3945.0%4.2%50.8%1.200.72
BXD1440.29664.9645.7%4.4%49.9%1.200.69
BXD1450.25766.4644.9%4.4%50.8%1.240.72
BXD1460.41854.0347.4%4.1%48.5%1.100.74
BXD1510.39658.7743.6%3.9%52.5%1.330.78
BXD1520.270151.4252.7%4.7%42.6%1.360.73
BXD1530.36670.2644.7%3.9%51.4%1.290.79
BXD1540.40753.4043.6%4.1%52.4%1.380.79
BXD1610.38848.9843.7%4.1%52.2%1.410.79
BXD1620.35355.4843.7%4.0%52.3%1.440.82
BXD1630.33961.6045.3%4.2%50.5%1.420.80
BXD1640.24095.1550.4%4.7%44.9%1.390.73
BXD1650.27070.6346.3%4.3%49.4%1.450.75
BXD1660.28172.9947.0%4.2%48.8%1.400.77
BXD1810.38459.7845.4%4.0%50.6%1.120.71
BXD1820.28893.6749.5%4.4%46.1%1.150.70
BXD1830.28689.6445.2%4.1%50.8%1.270.71
BXD1840.29469.8544.0%4.1%51.8%1.260.70
BXD1850.41759.8047.0%4.3%48.7%1.150.72
BXD1860.37365.3045.9%4.3%49.8%1.180.74
BXD1910.36459.3546.7%4.2%49.1%1.270.73
BXD1920.41959.7746.8%4.1%49.1%1.230.74
BXD1930.30362.6646.0%4.4%49.6%1.300.74
BXD1940.28091.0051.8%4.5%43.7%1.320.68
BXD1950.30366.1847.1%4.5%48.4%1.330.72
BXD1960.38963.6147.5%4.4%48.1%1.280.73
BXD2110.35075.9344.9%3.9%51.3%1.290.77
BXD2120.33859.0043.8%4.0%52.1%1.290.77
BXD2130.30459.9444.9%4.0%51.2%1.440.77
BXD2140.23594.4451.0%4.8%44.2%1.350.73
BXD2150.31064.2246.9%4.2%48.9%1.420.77
BXD2210.36358.1045.3%3.9%50.8%1.240.80
BXD2220.38555.5844.5%4.0%51.5%1.280.80
BXD2230.34561.0346.8%4.3%48.9%1.350.81
BXD2240.24285.3653.6%4.8%41.6%1.350.75
BXD2250.31662.0247.3%4.5%48.2%1.400.77
BXD2260.32566.3847.5%4.3%48.2%1.290.78
BXD2310.27675.9945.3%4.1%50.6%1.270.75
BXD2320.33381.7647.9%4.0%48.1%1.280.78
BXD2330.275102.4647.4%3.9%48.8%1.300.77
BXD2340.178115.8350.2%4.7%45.2%1.380.73
BXD2350.25892.3847.6%4.2%48.2%1.320.77
BXD2360.25688.2346.3%4.1%49.5%1.310.74
BXD2410.34871.6944.9%4.1%51.1%1.250.74
BXD2420.32474.0544.3%4.0%51.7%1.230.80
BXD2430.40164.0845.6%4.0%50.4%1.080.74
BXD2440.24682.8445.7%4.3%50.0%1.200.75
BXD2460.38954.2844.3%4.2%51.5%1.200.67
BXD2710.50750.0843.6%3.9%52.5%1.480.81
BXD2720.46851.2944.0%3.7%52.3%1.440.90
BXD2730.52649.6743.5%3.9%52.6%1.290.94
BXD2740.53748.9243.5%3.8%52.8%1.460.91
BXD2810.28451.5844.6%4.2%51.2%1.260.80
BXD2820.32250.1644.9%4.3%50.8%1.210.76
BXD2830.39750.9745.9%4.2%49.9%1.140.78
BXD2840.33074.2651.4%4.6%44.0%1.260.72
BXD2850.28452.3444.3%4.4%51.3%1.320.73
BXD2860.34957.1447.8%4.5%47.7%1.300.79
BXD2910.42258.6844.0%3.7%52.3%1.420.86
BXD2930.40058.7243.1%3.8%53.2%1.310.89
BXD2950.36561.7946.9%4.3%48.8%1.380.91
BXD3110.37951.1045.8%4.3%50.0%1.130.75
BXD3120.33348.6443.7%4.1%52.2%1.220.71
BXD3130.51947.7148.2%4.3%47.5%1.130.72
BXD3140.24375.2448.6%4.8%46.6%1.230.71
BXD3150.32553.1946.9%4.6%48.6%1.220.75
BXD3160.32046.9844.5%4.3%51.2%1.240.74
BXD3210.25670.4345.4%3.9%50.8%1.830.87
BXD3220.28867.4444.5%4.1%51.4%1.340.77
BXD3230.36158.1344.4%4.0%51.6%1.360.77
BXD3240.36761.3944.7%4.1%51.2%1.400.78
BXD3250.32468.0445.6%4.3%50.1%1.390.75
BXD3260.26695.4950.8%4.5%44.6%1.410.73
BXD3310.34461.6544.9%3.9%51.2%1.380.82
BXD3320.35661.0444.7%4.1%51.2%1.440.79
BXD3340.38559.9244.1%3.9%52.0%1.380.82
BXD3410.29791.1352.1%4.6%43.3%1.340.70
BXD3420.50851.7944.8%3.9%51.3%1.420.76
BXD3430.28485.3350.7%4.6%44.7%1.510.72
BXD3440.29761.9544.9%4.1%51.0%1.360.77
BXD3450.51656.0246.3%4.0%49.7%1.330.74
BXD3460.54554.4645.2%3.8%51.0%1.490.87
BXD3610.43562.7448.1%4.0%47.8%1.360.73
BXD3620.33371.2448.8%4.3%46.8%1.440.72
BXD3630.32072.9748.3%4.3%47.4%1.380.74
BXD3640.39173.5849.5%4.2%46.3%1.250.75
BXD3810.30387.6839.2%3.3%57.5%1.080.82
BXD3820.34361.3939.7%3.2%57.1%1.120.82
BXD3830.45367.1941.2%3.4%55.4%1.110.83
BXD3840.42464.3641.6%3.5%55.0%1.110.82
BXD3910.35764.3647.3%4.3%48.3%1.330.78
BXD3920.33260.2346.5%4.2%49.3%1.410.80
BXD3930.33165.2746.2%4.2%49.6%1.320.75
BXD3940.36262.6045.5%4.0%50.5%1.280.80
BXD3950.34758.9746.1%4.3%49.7%1.290.79
BXD3960.32763.1246.2%4.3%49.6%1.290.77
BXD4010.37160.0145.2%4.1%50.7%1.320.77
BXD4020.24584.6949.1%4.5%46.4%1.330.72
BXD4030.32464.1746.8%4.3%48.8%1.340.73
BXD4040.28063.9745.1%4.2%50.7%1.480.74
BXD4050.27169.4045.9%4.3%49.8%1.330.74
BXD4060.30759.9945.5%4.2%50.4%1.370.76
BXD4210.42453.9145.1%4.1%50.8%1.540.83
BXD4220.21692.3446.7%4.3%49.1%1.440.76
BXD4230.24984.5245.7%4.1%50.2%1.520.80
BXD4250.23685.2946.2%4.0%49.8%1.380.77
DBA/2J10.31379.6946.8%4.2%49.0%1.240.72
DBA/2J20.29482.2746.5%4.2%49.3%1.270.73
DBA/2J30.34978.5847.8%4.3%47.8%1.310.73
DBA/2J40.38972.0248.0%4.3%47.7%1.210.77
DBA/2J50.36266.7346.5%4.4%49.1%1.230.75
DBA/2J60.34179.8846.7%4.0%49.4%1.330.74
C57BL/6J10.29482.8446.7%4.1%49.2%1.230.76
C57BL/6J20.24280.4043.1%4.1%52.8%1.290.76
C57BL/6J30.250110.9047.8%4.0%48.2%1.320.76
C57BL/6J40.289101.8847.5%4.1%48.4%1.180.75
C57BL/6J50.299114.5948.7%4.1%47.3%1.130.74
C57BL/6J60.251105.9045.8%3.8%50.4%1.300.76
129P3/J10.49659.2641.9%3.5%54.5%1.280.79
129P3/J20.55050.8342.0%3.7%54.3%1.160.78
129P3/J30.44356.0843.0%3.8%53.3%1.220.73
129P3/J40.52158.9244.8%3.8%51.4%1.300.74
129P3/J50.50358.2644.9%3.8%51.3%1.320.74
129S1/SvImJ10.31166.7647.8%3.9%48.3%2.040.97
129S1/SvImJ20.26257.6344.5%3.9%51.6%1.610.81
129S1/SvImJ30.32262.6745.3%3.8%50.9%1.700.83
129S1/SvImJ40.185119.0250.2%4.4%45.5%1.660.75
A/J10.45351.8542.6%3.6%53.8%1.200.73
A/J20.39656.6145.9%3.9%50.2%1.210.76
A/J30.42162.3447.0%4.1%48.8%1.290.72
A/J40.50861.5248.2%4.1%47.7%1.220.74
AKR/J10.33154.7041.7%3.9%54.4%1.220.74
AKR/J20.46455.4644.1%3.7%52.1%1.300.76
AKR/J40.44453.6247.6%4.0%48.4%1.230.71
AKR/J50.43958.6247.4%4.3%48.3%1.230.70
BALB/cByJ10.33675.4950.0%4.1%45.9%1.540.82
BALB/cByJ20.28067.9347.1%4.3%48.7%1.430.76
BALB/cByJ30.31273.7747.7%4.1%48.2%1.790.92
BALB/cByJ40.26279.9746.1%4.1%49.8%1.380.79
BALB/cByJ50.27681.3246.3%4.1%49.6%1.340.79
BALB/cJ10.59154.2543.2%3.5%53.3%1.150.80
BALB/cJ20.34650.3639.9%3.3%56.8%1.200.77
BALB/cJ30.33352.7940.4%3.7%55.9%1.250.77
BALB/cJ50.49554.7845.0%3.7%51.3%1.150.72
BTBR T+tf/J30.31562.8346.4%4.1%49.5%1.380.78
BTBR T+tf/J40.24390.1251.6%4.8%43.6%1.310.75
BTBR T+tf/J50.29471.2146.6%4.3%49.0%1.410.77
BTBR T+tf/J60.26867.5346.6%4.2%49.2%1.320.75
BTBR T+tf/J10.37055.4045.7%4.1%50.2%1.410.75
BTBR T+tf/J20.48850.8947.2%4.2%48.6%1.360.75
C3H/HeJ10.51159.2043.3%3.4%53.3%1.170.83
C3H/HeJ20.40579.4941.3%3.3%55.5%1.180.83
C3H/HeJ30.45459.4741.7%3.5%54.9%1.160.81
C3H/HeJ40.44856.2841.5%3.5%55.0%1.160.79
C3H/HeJ50.38950.1741.1%3.6%55.2%1.240.79
C58/J10.33656.6646.0%4.2%49.8%1.290.73
C58/J20.37258.6146.7%4.3%49.0%1.210.71
C58/J30.36664.5846.8%4.2%49.0%1.200.72
C58/J40.37152.7245.3%4.1%50.6%1.240.72
CAST/EiJ10.46755.7447.1%3.8%49.1%1.390.79
CAST/EiJ20.54550.2946.8%3.8%49.4%1.340.84
CAST/EiJ30.46955.0847.4%4.0%48.5%1.320.76
CAST/EiJ40.39083.0553.0%4.4%42.6%1.360.72
CBA/J10.29267.2544.9%4.0%51.2%1.220.76
CBA/J20.34761.9946.4%4.0%49.7%1.250.82
CBA/J30.30562.1646.3%4.3%49.4%1.310.75
CBA/J40.30364.8246.5%4.0%49.5%1.340.76
CBA/J50.31364.1545.3%4.1%50.7%1.370.78
CBA/J60.36556.8445.6%4.1%50.4%1.310.76
FVB/NJ10.49763.9944.2%3.5%52.3%1.330.79
FVB/NJ20.47555.2444.8%3.8%51.4%1.330.74
FVB/NJ30.52756.0742.6%3.5%53.9%1.310.86
FVB/NJ40.44762.5641.7%3.5%54.8%1.240.82
KK/HIJ10.30993.5449.6%4.3%46.1%1.570.74
KK/HIJ20.29863.2448.0%4.4%47.6%1.370.72
KK/HIJ40.22393.0344.7%4.0%51.3%1.390.74
KK/HIJ50.153136.6751.9%4.6%43.5%1.240.71
MOLF/EiJ10.33967.1149.1%4.3%46.6%1.550.83
MOLF/EiJ20.31980.7349.1%4.2%46.7%1.520.78
MOLF/EiJ30.38069.0349.1%4.2%46.7%1.290.82
MOLF/EiJ40.23895.1948.7%4.1%47.2%1.350.79
NOD/LtJ10.35678.4249.1%4.2%46.7%1.350.76
NOD/LtJ20.42259.7147.4%4.0%48.5%1.250.73
NOD/LtJ30.37777.8449.8%4.0%46.2%1.240.75
NOD/LtJ40.53560.8650.6%4.4%45.0%1.280.74
NOD/LtJ50.33674.5846.6%3.9%49.5%1.320.72
NZW/LacJ20.44250.3144.6%4.1%51.3%1.330.82
NZW/LacJ30.33156.8644.2%4.0%51.7%1.600.78
NZW/LacJ40.33855.2344.1%4.0%51.9%1.310.78
NZW/LacJ50.35156.9049.3%4.3%46.5%1.300.75
PWD/PhJ10.44457.6547.2%3.9%48.9%1.620.78
PWD/PhJ20.32867.5847.3%4.2%48.5%1.360.76
PWD/PhJ30.32273.9047.5%4.0%48.5%1.460.81
PWD/PhJ40.27175.7946.1%4.0%50.0%1.390.79
PWD/PhJ50.191144.7357.7%5.0%37.3%1.360.67
SJL/J10.52854.5841.1%3.4%55.4%1.160.80
SJL/J30.66356.2141.8%3.3%55.0%1.220.75
SJL/J40.64652.9640.5%3.2%56.3%1.130.81
SJL/J50.63961.9144.8%3.4%51.9%1.370.79
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