From 3c3f988521c8de0bc2b39637eedf01cd6d70131e Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Mon, 5 Dec 2022 09:34:40 -0600
Subject: Minor edits

---
 features/index.md        | 6 +++---
 features/introduction.md | 1 +
 features/search.md       | 7 ++-----
 3 files changed, 6 insertions(+), 8 deletions(-)
 create mode 100644 features/introduction.md

(limited to 'features')

diff --git a/features/index.md b/features/index.md
index 34b0be6..4247410 100644
--- a/features/index.md
+++ b/features/index.md
@@ -2,6 +2,6 @@
 
 In this section we describe GN features:
 
-=> introduction.gmi Introduction
-=> search.gmi Search for genes, QTL, SNPs, etc.
-=> future-work.gmi Future work
+* [Introduction](introduction.md)
+* [Search](search.md) for genes, QTL, SNPs, etc.
+* [Future work](future-work.md)
diff --git a/features/introduction.md b/features/introduction.md
new file mode 100644
index 0000000..e10b99d
--- /dev/null
+++ b/features/introduction.md
@@ -0,0 +1 @@
+# Introduction
diff --git a/features/search.md b/features/search.md
index dad4373..363b356 100644
--- a/features/search.md
+++ b/features/search.md
@@ -18,7 +18,7 @@ species:mouse tissue:Liver - 0 results
 brca - only renders 2 results, why not BRCA2?
 ```
 
-Keywords like tissue appear to be case sensitive. Should not be the case.
+FIXME: keywords like tissue appear to be case sensitive. Should not be the case.
 
 GeneNetwork search functionality is used in the publication `Integrative Functional Genomics for Systems Genetics in GeneWeaver.org`. The authors present their webservice by searching for a "nociception" QTL in a region on chromosome 4 found in GN. They export the details and use it for further analysis in GeneWeaver\cite{bubier2016}.
 
@@ -35,10 +35,7 @@ and found new candidate genes included Slitrk6 and Cdk14. Slitrk6, in a Chromoso
 
 ## Methods
 
-GN search is built on
-Xapian, an Open Source Search Engine Library, released under the GPL v2+. It's written in C++, with bindings to allow use from Python, Guile and other languages.
+GN search is built on Xapian, an Open Source Search Engine Library, released under the GPL v2+. It's written in C++, with bindings to allow use from Python, Guile and other languages.
 Xapian is actively maintained and current Xapian users include, for example, the Debian website and the notmuch E-mail indexer.
 Xapian is a highly adaptable toolkit which allows developers to easily add advanced indexing and search facilities to their own applications. It has built-in support for several families of weighting models and also supports a rich set of boolean query operators\cite{Xapian}.
 We build the Xapian index from SQL data and RDF data in the GN databases.
-
-=> topics/xapian-indexing.gmi indexing optimizations
-- 
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