From 4728b25cb9df1a6c2b88830d0590f434ddb32c86 Mon Sep 17 00:00:00 2001 From: Pjotr Prins Date: Tue, 16 Nov 2021 06:35:21 -0600 Subject: Add ToC --- .../starting-from-known-gene/starting-from-known-gene.md | 14 ++++++++++---- 1 file changed, 10 insertions(+), 4 deletions(-) diff --git a/story-boards/starting-from-known-gene/starting-from-known-gene.md b/story-boards/starting-from-known-gene/starting-from-known-gene.md index 2370521..e254a03 100644 --- a/story-boards/starting-from-known-gene/starting-from-known-gene.md +++ b/story-boards/starting-from-known-gene/starting-from-known-gene.md @@ -2,7 +2,13 @@ GeneNetwork contains data on thousands of experiments. How do you mine GN when you have the name of a gene? Start with [BRCA2](https://genenetwork.org/genes/BRCA2). -## Use the search page +# Table of contents +1. [Global search](#gsearch) +1. [Gene aliases](#alias) +1. [Genewiki](#genewiki) +1. [TODO](#TODO) + +## Use the search page The top bar of GeneNetwork shows a global search. We can look for the `Brca2` mouse gene: @@ -11,7 +17,7 @@ The top bar of GeneNetwork shows a global search. We can look for the `Brca2` mo

-## Find the right alias/name +## Find the right alias/name GeneNetwork knows about aliases. But sometimes you want to check what aliases there are in mouse. If you search for BRCA2 and click on a search result, for example for [1448542_at](http://genenetwork.org/show_trait?trait_id=1448542_at&dataset=HC_M2_0606_P), you get to the 'trait page' which shows the aliases: @@ -22,11 +28,11 @@ you get to the 'trait page' which shows the aliases: GeneNetwork ignores case by default. In a search use quotes to search case sensitive. For example, [BRCA2](https://www.wikidata.org/wiki/Q17853272) on wikidata.org refers to the human gene. The mouse gene is named [Brca2](https://www.wikidata.org/wiki/Q14864738). -## Find the GeneNetwork genewiki entry +## Find the GeneNetwork genewiki entry GeneNetwork maintains info on gene entries. For example for [BRCA2](http://gn1.genenetwork.org/webqtl/main.py?FormID=geneWiki&symbol=BRCA2). -## TODO +## TODO * [ ] expand story line * [ ] global search is faulty, see gn-gemtext-threads/issues/genenetwork/global-search.gmi -- cgit v1.2.3