diff options
Diffstat (limited to 'general/datasets/Genex_bxd_liveret_rma_m_0211')
| -rw-r--r-- | general/datasets/Genex_bxd_liveret_rma_m_0211/notes.rtf | 3 | ||||
| -rw-r--r-- | general/datasets/Genex_bxd_liveret_rma_m_0211/summary.rtf | 29 |
2 files changed, 32 insertions, 0 deletions
diff --git a/general/datasets/Genex_bxd_liveret_rma_m_0211/notes.rtf b/general/datasets/Genex_bxd_liveret_rma_m_0211/notes.rtf new file mode 100644 index 0000000..3c8d261 --- /dev/null +++ b/general/datasets/Genex_bxd_liveret_rma_m_0211/notes.rtf @@ -0,0 +1,3 @@ +<p>A total of 239 probe sets have LRS >46. Maximum LRS of 124.5. Perfect concordance between phenotype of probe set and genotype for St3gal4 on Chr 9 at 34.9 Mb.</p>
+
+<p>Xist expression is uniformly high in BXD55 and BXD70 using probe set 1427262_at, but this is probably due to ethanol effect. Note that Eif2s3y indicates all strains have balanced male and female data.</p>
diff --git a/general/datasets/Genex_bxd_liveret_rma_m_0211/summary.rtf b/general/datasets/Genex_bxd_liveret_rma_m_0211/summary.rtf new file mode 100644 index 0000000..60d23d4 --- /dev/null +++ b/general/datasets/Genex_bxd_liveret_rma_m_0211/summary.rtf @@ -0,0 +1,29 @@ +<p>These data generated by Dr. Robert Rooney, Kristin Hamre, Divyen Patel, and colleagues at Genome Explorations as part of an SBIR from NIAAA (2010-2011).</p>
+
+<p>Data entered by Arthur Centeno, Jan and Feb 2011.</p>
+
+<p>Data error checked by Robert W. Williams, Jan-May 2011.</p>
+
+<p>eQTLs with LOD > 10</p>
+
+<p> </p>
+
+<ol>
+ <li>UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females: 303</li>
+ <li>UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males: 279</li>
+ <li>UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes: 493</li>
+ <li>GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females: 320</li>
+ <li>GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males: 207</li>
+ <li>GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes: 513</li>
+ <li>GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females: 189</li>
+ <li>GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males: 97</li>
+ <li>GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes: 327</li>
+ <li>GenEx BXD Sal Liver Affy M430 2.0 (Jan11) RMA Females: 274</li>
+ <li>GenEx BXD Sal Liver Affy M430 2.0 (Jan11) RMA Males: 175</li>
+ <li>GenEx BXD Sal Liver Affy M430 2.0 (Jan11) RMA Both Sexes: 444</li>
+ <li>GenEx BXD EtOH Liver Affy M430 2.0 (Jan11) RMA Females: 139</li>
+ <li>GenEx BXD EtOH Liver Affy M430 2.0 (Jan11) RMA Males: 73</li>
+ <li>GenEx BXD EtOH Liver Affy M430 2.0 (Jan11) RMA Both Sexes: 230</li>
+</ol>
+
+<p> </p>
|