From d453f607ffa5d3a7c6dde31e16b0f4cbb7cbb069 Mon Sep 17 00:00:00 2001 From: Frederick Muriuki Muriithi Date: Tue, 26 Sep 2023 03:11:45 +0300 Subject: Handle temporary edge cases Fetching resource data: system and group categories of resources do not have associated genetic data. This commit adds some code to temporarily handle that case as an edge case before I can devote more time to fixing the issue in a much better way. --- gn_auth/auth/authorisation/resources/groups/views.py | 3 +++ gn_auth/auth/authorisation/resources/models.py | 3 ++- 2 files changed, 5 insertions(+), 1 deletion(-) (limited to 'gn_auth') diff --git a/gn_auth/auth/authorisation/resources/groups/views.py b/gn_auth/auth/authorisation/resources/groups/views.py index f146ffd..ba34040 100644 --- a/gn_auth/auth/authorisation/resources/groups/views.py +++ b/gn_auth/auth/authorisation/resources/groups/views.py @@ -233,6 +233,9 @@ def unlinked_phenotype_data( @require_oauth("profile group resource") def unlinked_data(resource_type: str) -> Response: """View data linked to the group but not linked to any resource.""" + if resource_type in ("system", "group"): + return jsonify(tuple()) + if resource_type not in ("all", "mrna", "genotype", "phenotype"): raise AuthorisationError(f"Invalid resource type {resource_type}") diff --git a/gn_auth/auth/authorisation/resources/models.py b/gn_auth/auth/authorisation/resources/models.py index 6d8e008..a16ca16 100644 --- a/gn_auth/auth/authorisation/resources/models.py +++ b/gn_auth/auth/authorisation/resources/models.py @@ -181,7 +181,8 @@ def resource_data(conn, resource, offset: int = 0, limit: Optional[int] = None) resource_data_function = { "mrna": mrna_resource_data, "genotype": genotype_resource_data, - "phenotype": phenotype_resource_data + "phenotype": phenotype_resource_data, + "system": lambda *args: tuple() } with db.cursor(conn) as cursor: return tuple( -- cgit v1.2.3