"""Test cases for procedures defined in file_utils.py""" import os import unittest from unittest import mock from gn3.file_utils import jsonfile_to_dict from gn3.file_utils import lookup_file from gn3.file_utils import get_dir_hash class TestFileUtils(unittest.TestCase): """Test cases for procedures defined in file_utils.py""" def test_get_dir_hash(self): """Test that a directory is hashed correctly""" test_dir = os.path.join(os.path.dirname(__file__), "test_data") self.assertEqual("928a0e2e4846b4b3c2881d9c1d6cfce4", get_dir_hash(test_dir)) def test_get_dir_hash_non_existent_dir(self): """Test thata an error is raised when the dir does not exist""" self.assertRaises(FileNotFoundError, get_dir_hash, "/non-existent-file") @mock.patch("os.path.isfile") @mock.patch.dict(os.environ, {"GENENETWORK_FILES": "/tmp/"}) def test_lookup_genotype_file_exists(self, mock_isfile): """Test whether genotype file exists if file is present""" mock_isfile.return_value = True self.assertEqual(lookup_file("GENENETWORK_FILES", "genotype_files", "genotype.txt"), "/tmp/genotype_files/genotype.txt") @mock.patch("os.path.isfile") @mock.patch.dict(os.environ, {"GENENETWORK_FILES": "/tmp"}) def test_lookup_genotype_file_does_not_exist(self, mock_isfile): """Test whether genotype file exists if file is absent""" mock_isfile.return_value = False self.assertRaises(FileNotFoundError, lookup_file, "GENENETWORK_FILES", "genotype_files", "genotype.txt") def test_lookup_genotype_file_env_does_not_exist(self): """Test whether genotype file exists if GENENETWORK_FILES is absent""" self.assertRaises(FileNotFoundError, lookup_file, "GENENETWORK_FILES", "genotype_files", "genotype.txt") def test_jsonfile_to_dict(self): """Test that a json file is parsed correctly""""" json_file = os.path.join(os.path.dirname(__file__), "test_data", "metadata.json") self.assertEqual("Longer description", jsonfile_to_dict(json_file).get("description")) def test_jsonfile_to_dict_nonexistent_file(self): """Test that a ValueError is raised when the json file is non-existent""" self.assertRaises(FileNotFoundError, jsonfile_to_dict, "/non-existent-dir")