"""Tests for gn3/db/traits.py""" from unittest import mock, TestCase from gn3.db.traits import retrieve_type_trait_name class TestTraitsDBFunctions(TestCase): "Test cases for traits functions" def test_retrieve_probeset_trait_name(self): """Test that the function is called correctly.""" for trait_type, thresh, trait_name, columns in [ ["ProbeSet", 9, "testName", "Id, Name, FullName, ShortName, DataScale"], ["Geno", 3, "genoTraitName", "Id, Name, FullName, ShortName"], ["Publish", 6, "publishTraitName", "Id, Name, FullName, ShortName"], ["Temp", 4, "tempTraitName", "Id, Name, FullName, ShortName"]]: db_mock = mock.MagicMock() with self.subTest(trait_type=trait_type): with db_mock.cursor() as cursor: cursor.fetchone.return_value = ( "testName", "testNameFull", "testNameShort", "dataScale") self.assertEqual( retrieve_type_trait_name( trait_type, thresh, trait_name, db_mock), ("testName", "testNameFull", "testNameShort", "dataScale")) cursor.execute.assert_called_once_with( "SELECT {cols} " "FROM {ttype}Freeze " "WHERE public > %(threshold)s AND " "(Name = %(name)s OR FullName = %(name)s OR ShortName = %(name)s)".format( cols=columns, ttype=trait_type), {"threshold": thresh, "name": trait_name})