"""Tests for db/phenotypes.py""" from unittest import TestCase from unittest import mock from gn3.db import fetchone from gn3.db import update from gn3.db import diff_from_dict from gn3.db.phenotypes import Phenotype class TestPhenotypes(TestCase): """Test cases for fetching chromosomes""" def test_update_phenotype_with_no_data(self): """Test that a phenotype is updated correctly if an empty Phenotype dataclass is provided """ db_mock = mock.MagicMock() self.assertEqual(update( conn=db_mock, table="Phenotype", data=Phenotype(), where=Phenotype()), None) def test_update_phenotype_with_data(self): """ Test that a phenotype is updated correctly if some data is provided """ db_mock = mock.MagicMock() with db_mock.cursor() as cursor: type(cursor).rowcount = 1 self.assertEqual(update( conn=db_mock, table="Phenotype", data=Phenotype( pre_pub_description="Test Pre Pub", submitter="Rob", post_pub_description="Test Post Pub"), where=Phenotype(id_=1, owner="Rob")), 1) cursor.execute.assert_called_once_with( "UPDATE Phenotype SET " "Pre_publication_description = %s, " "Post_publication_description = %s, " "Submitter = %s WHERE id = %s AND Owner = %s", ('Test Pre Pub', 'Test Post Pub', 'Rob', 1, 'Rob')) def test_fetch_phenotype(self): """Test that a single phenotype is fetched properly """ db_mock = mock.MagicMock() with db_mock.cursor() as cursor: test_data = ( 35, "Test pre-publication", "Test post-publication", "Original description A", "cm^2", "pre-abbrev", "post-abbrev", "LAB001", "R. W.", "R. W.", "R. W." ) cursor.fetchone.return_value = test_data phenotype = fetchone(db_mock, "Phenotype", where=Phenotype(id_=35, owner="Rob")) self.assertEqual(phenotype.id_, 35) self.assertEqual(phenotype.pre_pub_description, "Test pre-publication") cursor.execute.assert_called_once_with( "SELECT * FROM Phenotype WHERE id = %s AND Owner = %s", (35, 'Rob')) def test_diff_from_dict(self): """Test that a correct diff is generated""" self.assertEqual(diff_from_dict({"id": 1, "data": "a"}, {"id": 2, "data": "b"}), {"id": {"old": 1, "new": 2}, "data": {"old": "a", "new": "b"}})