"""Fixtures for auth tests.""" import uuid import pytest from yoyo.backends import DatabaseBackend from yoyo import get_backend, read_migrations from yoyo.migrations import Migration, MigrationList from gn3.auth import db from gn3.auth.authentication.users import User from gn3.auth.authorisation.groups import Group from gn3.auth.authorisation.resources import Resource, ResourceCategory from gn3.migrations import apply_migrations, rollback_migrations @pytest.fixture(scope="session") def auth_testdb_path(test_app_config): # pylint: disable=redefined-outer-name """Get the test application's auth database file""" return test_app_config["AUTH_DB"] @pytest.fixture(scope="session") def auth_migrations_dir(test_app_config): # pylint: disable=redefined-outer-name """Get the test application's auth database file""" return test_app_config["AUTH_MIGRATIONS"] def apply_single_migration(backend: DatabaseBackend, migration: Migration):# pylint: disable=[redefined-outer-name] """Utility to apply a single migration""" apply_migrations(backend, MigrationList([migration])) def rollback_single_migration(backend: DatabaseBackend, migration: Migration):# pylint: disable=[redefined-outer-name] """Utility to rollback a single migration""" rollback_migrations(backend, MigrationList([migration])) @pytest.fixture(scope="session") def backend(auth_testdb_path):# pylint: disable=redefined-outer-name """Fixture: retrieve yoyo backend for auth database""" return get_backend(f"sqlite:///{auth_testdb_path}") @pytest.fixture(scope="session") def all_migrations(auth_migrations_dir): # pylint: disable=redefined-outer-name """Retrieve all the migrations""" return read_migrations(auth_migrations_dir) @pytest.fixture(scope="function") def conn_after_auth_migrations(backend, auth_testdb_path, all_migrations): # pylint: disable=redefined-outer-name """Run all migrations and return a connection to the database after""" apply_migrations(backend, all_migrations) with db.connection(auth_testdb_path) as conn: yield conn rollback_migrations(backend, all_migrations) def migrations_up_to(migration, migrations_dir): """Run all the migration before `migration`.""" migrations = read_migrations(migrations_dir) index = [mig.path for mig in migrations].index(migration) return MigrationList(migrations[0:index]) TEST_GROUPS = ( Group(uuid.UUID("9988c21d-f02f-4d45-8966-22c968ac2fbf"), "TheTestGroup"), Group(uuid.UUID("e37d59d7-c05e-4d67-b479-81e627d8d634"), "TheTestGroup")) @pytest.fixture(scope="function") def test_group(conn_after_auth_migrations):# pylint: disable=[redefined-outer-name] """Fixture: setup a test group.""" query = "INSERT INTO groups(group_id, group_name) VALUES (?, ?)" with db.cursor(conn_after_auth_migrations) as cursor: cursor.executemany( query, tuple( (str(group.group_id), group.group_name) for group in TEST_GROUPS)) yield (conn_after_auth_migrations, TEST_GROUPS[0]) TEST_USERS = ( User(uuid.UUID("ecb52977-3004-469e-9428-2a1856725c7f"), "group@lead.er", "Group Leader"), User(uuid.UUID("21351b66-8aad-475b-84ac-53ce528451e3"), "group@mem.ber01", "Group Member 01"), User(uuid.UUID("ae9c6245-0966-41a5-9a5e-20885a96bea7"), "group@mem.ber02", "Group Member 02"), User(uuid.UUID("9a0c7ce5-2f40-4e78-979e-bf3527a59579"), "unaff@iliated.user", "Unaffiliated User")) @pytest.fixture(scope="function") def test_users(conn_after_auth_migrations):# pylint: disable=[redefined-outer-name] """Fixture: setup test users.""" query = "INSERT INTO users(user_id, email, name) VALUES (?, ?, ?)" query_user_roles = "INSERT INTO user_roles(user_id, role_id) VALUES (?, ?)" test_user_roles = ( ("ecb52977-3004-469e-9428-2a1856725c7f", "a0e67630-d502-4b9f-b23f-6805d0f30e30"),) with db.cursor(conn_after_auth_migrations) as cursor: cursor.executemany(query, ( (str(user.user_id), user.email, user.name) for user in TEST_USERS)) cursor.executemany(query_user_roles, test_user_roles) yield (conn_after_auth_migrations, TEST_USERS) with db.cursor(conn_after_auth_migrations) as cursor: cursor.executemany( "DELETE FROM user_roles WHERE user_id=?", (("ecb52977-3004-469e-9428-2a1856725c7f",),)) cursor.executemany( "DELETE FROM users WHERE user_id=?", (("ecb52977-3004-469e-9428-2a1856725c7f",), ("21351b66-8aad-475b-84ac-53ce528451e3",), ("ae9c6245-0966-41a5-9a5e-20885a96bea7",), ("9a0c7ce5-2f40-4e78-979e-bf3527a59579",))) @pytest.fixture(scope="function") def test_users_in_group(test_group, test_users):# pylint: disable=[redefined-outer-name] """Link the users to the groups.""" conn = test_group[0] group = test_group[1] users = test_users[1] query_params = tuple( (str(group.group_id), str(user.user_id)) for user in users if user.email not in ("unaff@iliated.user",)) with db.cursor(conn) as cursor: cursor.executemany( "INSERT INTO group_users(group_id, user_id) VALUES (?, ?)", query_params) yield (conn, group, users) with db.cursor(conn) as cursor: cursor.executemany( "DELETE FROM group_users WHERE group_id=? AND user_id=?", query_params) TEST_RESOURCES = ( Resource(TEST_GROUPS[0], uuid.UUID("26ad1668-29f5-439d-b905-84d551f85955"), "ResourceG01R01", ResourceCategory(uuid.UUID("48056f84-a2a6-41ac-8319-0e1e212cba2a"), "genotype", "Genotype Dataset"), True), Resource(TEST_GROUPS[0], uuid.UUID("2130aec0-fefd-434d-92fd-9ca342348b2d"), "ResourceG01R02", ResourceCategory(uuid.UUID("548d684b-d4d1-46fb-a6d3-51a56b7da1b3"), "phenotype", "Phenotype (Publish) Dataset"), False), Resource(TEST_GROUPS[0], uuid.UUID("e9a1184a-e8b4-49fb-b713-8d9cbeea5b83"), "ResourceG01R03", ResourceCategory(uuid.UUID("fad071a3-2fc8-40b8-992b-cdefe7dcac79"), "mrna", "mRNA Dataset"), False), Resource(TEST_GROUPS[1], uuid.UUID("14496a1c-c234-49a2-978c-8859ea274054"), "ResourceG02R01", ResourceCategory(uuid.UUID("48056f84-a2a6-41ac-8319-0e1e212cba2a"), "genotype", "Genotype Dataset"), False), Resource(TEST_GROUPS[1], uuid.UUID("04ad9e09-94ea-4390-8a02-11f92999806b"), "ResourceG02R02", ResourceCategory(uuid.UUID("fad071a3-2fc8-40b8-992b-cdefe7dcac79"), "mrna", "mRNA Dataset"), True)) @pytest.fixture(scope="function") def test_resources(test_group):# pylint: disable=[redefined-outer-name] """fixture: setup test resources in the database""" conn, _group = test_group with db.cursor(conn) as cursor: cursor.executemany( "INSERT INTO resources VALUES (?,?,?,?,?)", ((str(res.group.group_id), str(res.resource_id), res.resource_name, str(res.resource_category.resource_category_id), 1 if res.public else 0) for res in TEST_RESOURCES)) return (conn, TEST_RESOURCES) @pytest.fixture(scope="function") def fixture_user_resources(test_users_in_group, test_resources):# pylint: disable=[redefined-outer-name, unused-argument] """fixture: link users to roles and resources""" conn, _resources = test_resources ## TODO: setup user roles ## TODO: attach user roles to specific resources return conn