"""module contains integration tests for trait endpoints""" from unittest import TestCase from unittest import mock from gn3.app import create_app class TraitIntegrationTest(TestCase): """class contains integration tests for\ traits""" def setUp(self): self.app = create_app().test_client() @mock.patch("gn3.api.traits.fetch_trait") def test_create_trait(self, mock_fetch_trait): """test the endpoint for creating traits\ endpoint requires trait name and dataset name""" trait_results = { "dataset": None, "trait_name": "1449593_at", "trait_data": { "BXD11": 8.464, "BXD12": 8.414, "BXD13": 8.753, "BXD15": 8.5, "BXD16": 8.832 } } mock_fetch_trait.return_value = trait_results results = self.app.get( "/api/trait/1449593_at/HC_M2_0606_P", follow_redirects=True) trait_data = results.get_json() self.assertEqual(results.status_code, 200) self.assertEqual(trait_data, trait_results) @mock.patch("gn3.api.traits.get_trait_info_data") def test_retrieve_trait_info(self, mock_get_trait_info): """integration test for endpoints for retrieving\ trait info expects the dataset of trait to have been created""" trait_post_data = { "trait": {"trait_name": ""}, "trait_dataset": {"dataset_name": ""} } expected_api_results = { "description": "trait description", "chr": "", "locus": "", "mb": "", "abbreviation": "trait_abbreviation", "trait_display_name": "trait_name" } mock_get_trait_info.return_value = expected_api_results trait_info = self.app.post( "/api/trait/trait_info/144_at", json=trait_post_data, follow_redirects=True) trait_info_results = trait_info.get_json() self.assertEqual(trait_info.status_code, 200) self.assertEqual(trait_info_results, expected_api_results)