"""Test fixtures to set up a test named graph for loading RDF data.""" import os import pytest import requests from requests.auth import HTTPDigestAuth def get_sparql_auth_conf(config_obj) -> dict: """Fetch SPARQL auth configuration from the configuration object.""" return { "sparql_user": config_obj["SPARQL_USER"], "sparql_auth_uri": config_obj["SPARQL_AUTH_URI"], "sparql_crud_auth_uri": config_obj["SPARQL_CRUD_AUTH_URI"], "sparql_endpoint": config_obj["SPARQL_ENDPOINT"], "sparql_password": config_obj["SPARQL_PASSWORD"], } # XXXX: Currently we run the tests against CD's virtuoso instance. # This is not idempotent. Consider having a special virtuoso instance # just for running tests. @pytest.fixture(scope="module") def rdf_setup(fxtr_app_config): """Upload RDF to a Virtuoso named graph""" # Define the URL and file sparql_conf = get_sparql_auth_conf(fxtr_app_config) url = sparql_conf["sparql_crud_auth_uri"] file_path = os.path.join( os.path.dirname(__file__).split("fixtures")[0], "test_data/ttl-files/test-data.ttl", ) # Define the query parameters and authentication params = {"graph": "http://cd-test.genenetwork.org"} auth = HTTPDigestAuth( sparql_conf["sparql_user"], sparql_conf["sparql_password"]) # Make sure this graph does not exist before running anything requests.delete(url, params=params, auth=auth) # Open the file in binary mode and send the request with open(file_path, "rb") as file: response = requests.put(url, params=params, auth=auth, data=file) yield response requests.delete(url, params=params, auth=auth)