"""module contains general tools forgenenetwork""" import os from default_settings import GENENETWORK_FILES def valid_file(file_name): """check if file is valid""" if os.path.isfile(file_name): return file_name return None def valid_path(dir_name): """check if path is valid""" if os.path.isdir(dir_name): return dir_name return None def locate_ignore_error(name, subdir=None): """ Locate a static flat file in the GENENETWORK_FILES environment. This function does not throw an error when the file is not found but returns None. """ base = GENENETWORK_FILES if subdir: base = base+"/"+subdir if valid_path(base): lookfor = base + "/" + name if valid_file(lookfor): return lookfor return None