PREFIXES = {
    "dcat": "http://www.w3.org/ns/dcat#",
    "dct": "http://purl.org/dc/terms/",
    "ex": "http://example.org/stuff/1.0/",
    "fabio": "http://purl.org/spar/fabio/",
    "foaf": "http://xmlns.com/foaf/0.1/",
    "generif": "http://www.ncbi.nlm.nih.gov/gene?cmd=Retrieve&dopt=Graphics&list_uids=",
    "genotype": "http://genenetwork.org/genotype/",
    "gn": "http://genenetwork.org/id/",
    "gnc": "http://genenetwork.org/category/",
    "gnt": "http://genenetwork.org/term/",
    "owl": "http://www.w3.org/2002/07/owl#",
    "phenotype": "http://genenetwork.org/phenotype/",
    "prism": "http://prismstandard.org/namespaces/basic/2.0/",
    "publication": "http://genenetwork.org/publication/",
    "pubmed": "http://rdf.ncbi.nlm.nih.gov/pubmed/",
    "rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#",
    "rdfs": "http://www.w3.org/2000/01/rdf-schema#",
    "skos": "http://www.w3.org/2004/02/skos/core#",
    "taxon": "https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=",
    "up": "http://purl.uniprot.org/core/",
    "xkos": "http://rdf-vocabulary.ddialliance.org/xkos#",
    "xsd": "http://www.w3.org/2001/XMLSchema#",
}

RDF_PREFIXES = "\n".join([f"PREFIX {key}: <{value}>"
                          for key, value in PREFIXES.items()])

BASE_CONTEXT = {
    "data": "@graph",
    "id": "@id",
    "type": "@type",
    "gn": "http://genenetwork.org/id/",
    "gnc": "http://genenetwork.org/category/",
    "gnt": "http://genenetwork.org/term/",
    "rdfs": "http://www.w3.org/2000/01/rdf-schema#",
    "rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#>",
}

DATASET_CONTEXT = {
    "accessRights": "dct:accessRights",
    "accessionId": "dct:identifier",
    "acknowledgement": "gnt:hasAcknowledgement",
    "altLabel": "skos:altLabel",
    "caseInfo": "gnt:hasCaseInfo",
    "classifiedUnder": "xkos:classifiedUnder",
    "contributors": "dct:creator",
    "contactPoint": "dcat:contactPoint",
    "created": "dct:created",
    "dcat": "http://www.w3.org/ns/dcat#",
    "dct": "http://purl.org/dc/terms/",
    "description": "dct:description",
    "ex": "http://example.org/stuff/1.0/",
    "experimentDesignInfo": "gnt:hasExperimentDesignInfo",
    "experimentType": "gnt:hasExperimentType",
    "foaf": "http://xmlns.com/foaf/0.1/",
    "geoSeriesId": "gnt:hasGeoSeriesId",
    "gnt": "http://genenetwork.org/term/",
    "inbredSet": "gnt:belongsToGroup",
    "label": "rdfs:label",
    "normalization": "gnt:usesNormalization",
    "platformInfo": "gnt:hasPlatformInfo",
    "notes": "gnt:hasNotes",
    "organization": "foaf:Organization",
    "prefLabel": "skos:prefLabel",
    "citation": "dct:isReferencedBy",
    "GoTree": "gnt:hasGOTreeValue",
    "platform": "gnt:usesPlatform",
    "processingInfo": "gnt:hasDataProcessingInfo",
    "rdfs": "http://www.w3.org/2000/01/rdf-schema#",
    "skos": "http://www.w3.org/2004/02/skos/core#",
    "specifics": "gnt:hasContentInfo",
    "title": "dct:title",
    "xkos": "http://rdf-vocabulary.ddialliance.org/xkos#",
    "tissueInfo": "gnt:hasTissueInfo",
    "tissue": "gnt:hasTissue",
    "contactWebUrl": "foaf:homepage",
    "contactName": "foaf:name",
}

SEARCH_CONTEXT = {
    "pages": "ex:pages",
    "hits": "ex:hits",
    "result": "ex:result",
    "results": "ex:items",
    "resultItem": "ex:resultType",
    "currentPage": "ex:currentPage",
}

DATASET_SEARCH_CONTEXT = SEARCH_CONTEXT | {
    "classifiedUnder": "xkos:classifiedUnder",
    "created": "dct:created",
    "dct": "http://purl.org/dc/terms/",
    "ex": "http://example.org/stuff/1.0/",
    "inbredSet": "ex:belongsToInbredSet",
    "title": "dct:title",
    "name": "rdfs:label",
    "rdfs": "http://www.w3.org/2000/01/rdf-schema#",
    "type": "@type",
    "xkos": "http://rdf-vocabulary.ddialliance.org/xkos#",
}

PUBLICATION_CONTEXT = {
    "dct": "http://purl.org/dc/terms/",
    "fabio": "http://purl.org/spar/fabio/",
    "prism": "http://prismstandard.org/namespaces/basic/2.0/",
    "xsd": "http://www.w3.org/2001/XMLSchema#",
    "title": "dct:title",
    "journal": "fabio:Journal",
    "volume": "prism:volume",
    "page": "fabio:page",
    "creator": "dct:creator",
    "abstract": "dct:abstract",
    "year": {
        "@id": "fabio:hasPublicationYear",
        "@type": "xsd:gYear",
    },
    "month": {
        "@id": "prism:publicationDate",
        "@type": "xsd:gMonth"
    },
}

PHENOTYPE_CONTEXT = BASE_CONTEXT | PUBLICATION_CONTEXT | {
    "skos": "http://www.w3.org/2004/02/skos/core#",
    "dcat": "http://www.w3.org/ns/dcat#",
    "prism": "http://prismstandard.org/namespaces/basic/2.0/",
    "traitName": "skos:altLabel",
    "trait": "rdfs:label",
    "altName": "rdfs:altLabel",
    "description": "dct:description",
    "abbreviation": "gnt:abbreviation",
    "labCode": "gnt:labCode",
    "submitter": "gnt:submitter",
    "dataset": "dcat:Distribution",
    "contributor": "dct:contributor",
    "mean": "gnt:mean",
    "locus": "gnt:locus",
    "lodScore": "gnt:lodScore",
    "references": "dct:isReferencedBy",
    "additive": "gnt:additive",
    "sequence": "gnt:sequence",
    "prefLabel": "skos:prefLabel",
    "identifier": "dct:identifier",
    "chromosome": "gnt:chr",
    "mb": "gnt:mb",
    "peakLocation": "gnt:locus",
    "species": "gnt:belongsToSpecies",
    "group": "gnt:belongsToGroup",
}