from math import sqrt from functools import reduce ## From GN1: mostly for clustering and heatmap generation def items_with_values(dbdata, userdata): """Retains only corresponding items in the data items that are not `None` values. This should probably be renamed to something sensible""" def both_not_none(item1, item2): if (item1 is not None) and (item2 is not None): return (item1, item2) return None def split_lists(accumulator, item): return [accumulator[0] + [item[0]], accumulator[1] + [item[1]]] return reduce( split_lists, filter(lambda x: x is not None, map(both_not_none, dbdata, userdata)), [[], []]) def compute_correlation(dbdata, userdata): x, y = items_with_values(dbdata, userdata) if len(x) < 6: return (0.0, len(x)) meanx = sum(x)/len(x) meany = sum(y)/len(y) def cal_corr_vals(acc, item): xitem, yitem = item return [ acc[0] + ((xitem - meanx) * (yitem - meany)), acc[1] + ((xitem - meanx) * (xitem - meanx)), acc[2] + ((yitem - meany) * (yitem - meany))] xyd, sxd, syd = reduce(cal_corr_vals, zip(x, y), [0.0, 0.0, 0.0]) try: return ((xyd/(sqrt(sxd)*sqrt(syd))), len(x)) except ZeroDivisionError as zde: return(0, len(x))