"""this module contains code for creating datasets""" from flask import Blueprint from flask import jsonify from gn3.computations.datasets import create_dataset from gn3.computations.datasets import get_traits_data from gn3.experimental_db import database_connector dataset = Blueprint("dataset", __name__) @dataset.route("/") def dataset_home(): """initial test endpont for dataset""" return jsonify({"results": "ok"}) @dataset.route("/create//") @dataset.route("/create//") def create_dataset_api(dataset_name, dataset_type=None): """Test api/create/dataset//""" new_dataset = create_dataset( dataset_type=dataset_type, dataset_name=dataset_name) results = { "dataset": new_dataset } return jsonify(results) @dataset.route("/fetch_traits_data//") def fetch_traits_data(dataset_name, dataset_type): """endpoints fetches sample for each trait in\ a dataset""" # what actually brings speed issues in correlation sample_ids = [4, 5, 6, 7, 8, 9, 10, 11, 12, 14, 15, 17, 18, 19, 20, 21, 22, 24, 25, 26, 28, 29, 30, 31, 35, 36, 37, 39, 98, 99, 100, 103, 487, 105, 106, 110, 115, 116, 117, 118, 119, 120, 919, 147, 121, 40, 41, 124, 125, 128, 135, 129, 130, 131, 132, 134, 138, 139, 140, 141, 142, 144, 145, 148, 149, 920, 922, 2, 3, 1, 1100] conn, _cursor = database_connector() results = get_traits_data(sample_ids=sample_ids, database_instance=conn, dataset_name=dataset_name, dataset_type=dataset_type) conn.close() return jsonify({"results": results})