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  {
   "cell_type": "markdown",
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   "source": [
    "#### Running GEMMA from GN3\n",
    "\n",
    "This document outlines how to use gemma from Genenetwork3."
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "If you are running gn3 through a development environment, ensure that it is up and running by running the command:\n",
    "\n",
    "```sh\n",
    "env FLASK_APP=\"main.py\" flask run --port 8080\n",
    "```\n",
    "\n",
    "To ensure that things are working, run:"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "{'code': 0, 'output': 'gemma-wrapper 0.98.1 (Ruby 2.6.5) by Pjotr Prins 2017,2018\\n'}\n"
     ]
    }
   ],
   "source": [
    "import requests\n",
    "r = requests.get(\"http://127.0.0.1:8080/gemma/version\")\n",
    "print(r.json())"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  }
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   "codemirror_mode": {
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