From ca8a18f00b06a7c6ca4b022223f381ddaebbf930 Mon Sep 17 00:00:00 2001
From: BonfaceKilz
Date: Tue, 12 Apr 2022 12:07:13 +0300
Subject: Test that a carriage return is removed when generating csv

* tests/unit/db/test_sample_data.py: import "get_trait_csv_sample_data".
(test_get_trait_csv_sample_data): New test function.
---
 tests/unit/db/test_sample_data.py | 53 +++++++++++++++++++++++++++++++++++++++
 1 file changed, 53 insertions(+)

(limited to 'tests')

diff --git a/tests/unit/db/test_sample_data.py b/tests/unit/db/test_sample_data.py
index f631239..0fc20f4 100644
--- a/tests/unit/db/test_sample_data.py
+++ b/tests/unit/db/test_sample_data.py
@@ -7,6 +7,7 @@ from gn3.db.sample_data import delete_sample_data
 from gn3.db.sample_data import get_case_attributes
 from gn3.db.sample_data import insert_sample_data
 from gn3.db.sample_data import update_sample_data
+from gn3.db.sample_data import get_trait_csv_sample_data
 
 
 @pytest.mark.unit_test
@@ -245,3 +246,55 @@ def test_get_case_attributes(mocker):
             "Condition (4)": "Description A",
             "Condition (5)": "Description B",
         }
+
+
+@pytest.mark.unit_test
+def test_get_trait_csv_sample_data(mocker):
+    """Test fetching trait sample data"""
+    mock_conn = mocker.MagicMock()
+    with mock_conn.cursor() as cursor:
+        cursor.fetchall.return_value = [
+            ["JL00005,896.000000,x,x", "Age", "896"],
+            ["JL00005,896.000000,x,x", "DOB", "4/22/04"],
+            ["JL00005,896.000000,x,x", "Date Geno", "x"],
+            ["JL00005,896.000000,x,x", "Drug/Site", "4OHPBN_J"],
+            ["JL00005,896.000000,x,x", "MOD", "Oct"],
+            ["JL00005,896.000000,x,x", "Platform", "x"],
+            [
+                "JL00005,896.000000,x,x",
+                "SNP",
+                """0
+""",
+            ],
+            ["JL00005,896.000000,x,x", "Sex", "M"],
+            ["JL00005,896.000000,x,x", "Site", "JL"],
+            ["JL00005,896.000000,x,x", "Tx", "1"],
+            ["JL00005,896.000000,x,x", "Year", "2004"],
+            ["JL00058,686.000000,x,x", "Age", "686"],
+            ["JL00058,686.000000,x,x", "DOB", "4/22/04"],
+            ["JL00058,686.000000,x,x", "Date Geno", "2017.06"],
+            ["JL00058,686.000000,x,x", "Drug/Site", "Cont_04_J"],
+            ["JL00058,686.000000,x,x", "MOD", "Mar"],
+            ["JL00058,686.000000,x,x", "Platform", "M"],
+            [
+                "JL00058,686.000000,x,x",
+                "SNP",
+                """2
+""",
+            ],
+            ["JL00058,686.000000,x,x", "Sex", "M"],
+            ["JL00058,686.000000,x,x", "Site", "JL"],
+            ["JL00058,686.000000,x,x", "Tx", "0"],
+            ["JL00058,686.000000,x,x", "Year", "2004"],
+        ]
+        assert get_trait_csv_sample_data(
+            conn=mock_conn, trait_name=10007, phenotype_id=35
+        ) == (
+            "Strain Name,Value,SE,Count,Age,DOB,"
+            "Date Geno,Drug/Site,MOD,"
+            "Platform,SNP,Sex,Site,Tx,Year\n"
+            "JL00005,896.000000,x,x,"
+            "896,4/22/04,x,4OHPBN_J,Oct,x,0,M,JL,1,2004\n"
+            "JL00058,686.000000,x,x,"
+            "686,4/22/04,2017.06,Cont_04_J,Mar,M,2,M,JL,0,2004\n"
+        )
-- 
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