From bc99eed7438e087650125ceab04797db7c726f31 Mon Sep 17 00:00:00 2001
From: BonfaceKilz
Date: Tue, 10 May 2022 17:05:28 +0300
Subject: Return all the results from CaseAttributes column as is

* gn3/db/sample_data.py: Remove "collections" import. Add "Optional" import.
(get_case_attributes): Return the results of "fetchall" from the case
attributes.
* tests/unit/db/test_sample_data.py (test_get_case_attributes): Update failing
test.
---
 tests/unit/db/test_sample_data.py | 64 ++++-----------------------------------
 1 file changed, 6 insertions(+), 58 deletions(-)

(limited to 'tests')

diff --git a/tests/unit/db/test_sample_data.py b/tests/unit/db/test_sample_data.py
index 0fc20f4..8af4d3b 100644
--- a/tests/unit/db/test_sample_data.py
+++ b/tests/unit/db/test_sample_data.py
@@ -239,62 +239,10 @@ def test_get_case_attributes(mocker):
         cursor.execute.assert_called_once_with(
             "SELECT Id, Name, Description FROM CaseAttribute"
         )
-        assert results == {
-            "Condition (1)": "",
-            "Tissue": "",
-            "Age": "Cum sociis natoque penatibus et magnis dis",
-            "Condition (4)": "Description A",
-            "Condition (5)": "Description B",
-        }
-
-
-@pytest.mark.unit_test
-def test_get_trait_csv_sample_data(mocker):
-    """Test fetching trait sample data"""
-    mock_conn = mocker.MagicMock()
-    with mock_conn.cursor() as cursor:
-        cursor.fetchall.return_value = [
-            ["JL00005,896.000000,x,x", "Age", "896"],
-            ["JL00005,896.000000,x,x", "DOB", "4/22/04"],
-            ["JL00005,896.000000,x,x", "Date Geno", "x"],
-            ["JL00005,896.000000,x,x", "Drug/Site", "4OHPBN_J"],
-            ["JL00005,896.000000,x,x", "MOD", "Oct"],
-            ["JL00005,896.000000,x,x", "Platform", "x"],
-            [
-                "JL00005,896.000000,x,x",
-                "SNP",
-                """0
-""",
-            ],
-            ["JL00005,896.000000,x,x", "Sex", "M"],
-            ["JL00005,896.000000,x,x", "Site", "JL"],
-            ["JL00005,896.000000,x,x", "Tx", "1"],
-            ["JL00005,896.000000,x,x", "Year", "2004"],
-            ["JL00058,686.000000,x,x", "Age", "686"],
-            ["JL00058,686.000000,x,x", "DOB", "4/22/04"],
-            ["JL00058,686.000000,x,x", "Date Geno", "2017.06"],
-            ["JL00058,686.000000,x,x", "Drug/Site", "Cont_04_J"],
-            ["JL00058,686.000000,x,x", "MOD", "Mar"],
-            ["JL00058,686.000000,x,x", "Platform", "M"],
-            [
-                "JL00058,686.000000,x,x",
-                "SNP",
-                """2
-""",
-            ],
-            ["JL00058,686.000000,x,x", "Sex", "M"],
-            ["JL00058,686.000000,x,x", "Site", "JL"],
-            ["JL00058,686.000000,x,x", "Tx", "0"],
-            ["JL00058,686.000000,x,x", "Year", "2004"],
-        ]
-        assert get_trait_csv_sample_data(
-            conn=mock_conn, trait_name=10007, phenotype_id=35
-        ) == (
-            "Strain Name,Value,SE,Count,Age,DOB,"
-            "Date Geno,Drug/Site,MOD,"
-            "Platform,SNP,Sex,Site,Tx,Year\n"
-            "JL00005,896.000000,x,x,"
-            "896,4/22/04,x,4OHPBN_J,Oct,x,0,M,JL,1,2004\n"
-            "JL00058,686.000000,x,x,"
-            "686,4/22/04,2017.06,Cont_04_J,Mar,M,2,M,JL,0,2004\n"
+        assert results == (
+            (1, "Condition", None),
+            (2, "Tissue", None),
+            (3, "Age", "Cum sociis natoque penatibus et magnis dis"),
+            (4, "Condition", "Description A"),
+            (5, "Condition", "Description B"),
         )
-- 
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