From a2da1f5dbc49b0137ef6b8ee9e234178521935f3 Mon Sep 17 00:00:00 2001
From: Alexander Kabui
Date: Mon, 27 Sep 2021 19:15:23 +0300
Subject: modify  integration tests

---
 tests/integration/test_wgcna.py | 60 ++++++++++++++++++++++++++++++++---------
 1 file changed, 48 insertions(+), 12 deletions(-)

(limited to 'tests')

diff --git a/tests/integration/test_wgcna.py b/tests/integration/test_wgcna.py
index 39dabb2..078449d 100644
--- a/tests/integration/test_wgcna.py
+++ b/tests/integration/test_wgcna.py
@@ -13,25 +13,61 @@ class WgcnaIntegrationTest(TestCase):
         self.app = create_app().test_client()
 
     @mock.patch("gn3.api.wgcna.call_wgcna_script")
-    def test_wgcna_endpoint(self, mock_wgcna_api):
+    def test_wgcna_endpoint(self, mock_wgcna_script):
         """test /api/wgcna/run_wgcna endpoint"""
 
-        wgcna_api_data = {
-            "eigengenes": ["1224_at", "121412_at", "32342342-at"],
-            "dendrogram_file_location": "/tmp/dend1.png"
-
+        wgcna_output_data = {
+            "code": 0,
+            "output": "run script successfully",
+            "data": {
+                "ModEigens": {
+                    "MEturquoise": [
+                        0.0646677768085351,
+                        0.137200224277058,
+                        0.63451113720732,
+                        -0.544002665501479,
+                        -0.489487590361863,
+                        0.197111117570427
+                    ]
+                },
+                "net_colors": {
+                    "X1": "turquoise",
+                    "X2": "turquoise",
+                    "X3": "turquoise",
+                    "X4": "turquoise"
+                },
+                "imageLoc": "/WGCNAoutput_1uujpTIpC.png"
+            }
         }
-        mock_wgcna_api.return_value = wgcna_api_data
 
         request_data = {
-
-            "trait_sample_data": [],
-
-
+            "trait_names": [
+                "1455537_at",
+                "1425637_at"
+            ],
+            "trait_sample_data": [
+                {
+                    "129S1/SvImJ": 6.142,
+                    "A/J": 5.31,
+                    "AKR/J": 3.49,
+                    "B6D2F1": 2.899,
+                    "BALB/cByJ": 1.172,
+                    "BALB/cJ": 7.396
+                },
+                {
+                    "129S1/SvImJ": 1.42,
+                    "A/J": 2.31,
+                    "AKR/J": 5.49,
+                    "B6D2F1": 3.899,
+                    "BALB/cByJ": 1.172,
+                    "BALB/cJ": 7.396
+                }
+            ]
         }
+        mock_wgcna_script.return_value = wgcna_output_data
 
         response = self.app.post("/api/wgcna/run_wgcna",
                                  json=request_data, follow_redirects=True)
 
-        self.assertEqual(response.status_code, 401)
-        self.assertEqual(response.get_json(), wgcna_api_data)
+        self.assertEqual(response.status_code, 200)
+        self.assertEqual(response.get_json(), wgcna_output_data)
-- 
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