From e5fb91296bb91e61b9822cd12e04da24a0e99060 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Thu, 12 Sep 2024 08:54:37 -0500
Subject: Fix failing tests after merging in Pjotr's pull request.

---
 tests/unit/computations/test_gemma.py | 4 ++--
 tests/unit/computations/test_wgcna.py | 2 +-
 2 files changed, 3 insertions(+), 3 deletions(-)

(limited to 'tests/unit')

diff --git a/tests/unit/computations/test_gemma.py b/tests/unit/computations/test_gemma.py
index 137c95c..6e1d097 100644
--- a/tests/unit/computations/test_gemma.py
+++ b/tests/unit/computations/test_gemma.py
@@ -19,9 +19,9 @@ class TestGemma(unittest.TestCase):
             _file = generate_pheno_txt_file(tmpdir="/tmp",
                                             trait_filename="phenotype.txt",
                                             values=["x", "x", "BXD07 438.700"])
-            self.assertEqual(_file, ("/tmp/gn2/phenotype_"
+            self.assertEqual(_file, ("/tmp/gn3/phenotype_"
                                      "P7y6QWnwBPedSZdL0+m/GQ.txt"))
-        open_mock.assert_called_with(("/tmp/gn2/phenotype_"
+        open_mock.assert_called_with(("/tmp/gn3/phenotype_"
                                       "P7y6QWnwBPedSZdL0+m/GQ.txt"), "w", encoding="utf-8")
         open_mock.return_value.write.assert_has_calls([
             mock.call("NA\n"),
diff --git a/tests/unit/computations/test_wgcna.py b/tests/unit/computations/test_wgcna.py
index a9108b0..0bf97ec 100644
--- a/tests/unit/computations/test_wgcna.py
+++ b/tests/unit/computations/test_wgcna.py
@@ -127,7 +127,7 @@ class TestWgcna(TestCase):
         wgcna_cmd = compose_wgcna_cmd(
             "wgcna.r", "/tmp/wgcna.json")
         self.assertEqual(
-            wgcna_cmd, "Rscript ./scripts/wgcna.r  /tmp/wgcna.json")
+            wgcna_cmd, "Rscript scripts/wgcna.r /tmp/wgcna.json")
 
     @pytest.mark.unit_test
     @mock.patch("gn3.computations.wgcna.TMPDIR", "/tmp")
-- 
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