From 6818670686de86c86b6c1aa372135ab6c22af156 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Thu, 21 Oct 2021 07:11:41 +0300
Subject: Document tests better

Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi

* Document the issues better to help with understanding what each test checks
  for.
---
 tests/unit/test_partial_correlations.py | 31 ++++++++++++++++++++++++++++++-
 1 file changed, 30 insertions(+), 1 deletion(-)

(limited to 'tests/unit')

diff --git a/tests/unit/test_partial_correlations.py b/tests/unit/test_partial_correlations.py
index 7631a71..c591c8f 100644
--- a/tests/unit/test_partial_correlations.py
+++ b/tests/unit/test_partial_correlations.py
@@ -106,6 +106,8 @@ class TestPartialCorrelations(TestCase):
 
     def test_dictify_by_samples(self):
         """
+        Test that `dictify_by_samples` generates the appropriate dict
+
         Given:
             a sequence of sequences with sample names, values and variances, as
             in the output of `gn3.partial_correlations.control_samples` or
@@ -133,7 +135,34 @@ class TestPartialCorrelations(TestCase):
             dictified_control_samples)
 
     def test_fix_samples(self):
-        """Test that fix_samples fixes the values"""
+        """
+        Test that `fix_samples` returns only the common samples
+
+        Given:
+            - A primary trait
+            - A sequence of control samples
+        When:
+            - The two arguments are passed to `fix_samples`
+        Then:
+            - Only the names of the samples present in the primary trait that
+              are also present in ALL the control traits are present in the
+              return value
+            - Only the values of the samples present in the primary trait that
+              are also present in ALL the control traits are present in the
+              return value
+            - ALL the values for ALL the control traits are present in the
+              return value
+            - Only the variances of the samples present in the primary trait
+              that are also present in ALL the control traits are present in the
+              return value
+            - ALL the variances for ALL the control traits are present in the
+              return value
+            - The return value is a tuple of the above items, in the following
+              order:
+                ((sample_names, ...), (primary_trait_values, ...),
+                 (control_traits_values, ...), (primary_trait_variances, ...)
+                 (control_traits_variances, ...))
+        """
         self.assertEqual(
             fix_samples(
                 {"B6cC3-1": {"sample_name": "B6cC3-1", "value": 7.51879,
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