From 74044f3c7985308b4996da3a52f91c5c20a19194 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Mon, 14 Feb 2022 06:56:32 +0300
Subject: Use pytest's "mark" feature to categorise tests

Use pytest's `mark` feature to explicitly categorise the tests and run them
per category
---
 tests/unit/test_heatmaps.py | 7 +++++++
 1 file changed, 7 insertions(+)

(limited to 'tests/unit/test_heatmaps.py')

diff --git a/tests/unit/test_heatmaps.py b/tests/unit/test_heatmaps.py
index a88341b..8781d6f 100644
--- a/tests/unit/test_heatmaps.py
+++ b/tests/unit/test_heatmaps.py
@@ -1,6 +1,7 @@
 """Module contains tests for gn3.heatmaps.heatmaps"""
 from unittest import TestCase
 
+import pytest
 from numpy.testing import assert_allclose
 
 from gn3.heatmaps import (
@@ -27,6 +28,7 @@ slinked = (
 class TestHeatmap(TestCase):
     """Class for testing heatmap computation functions"""
 
+    @pytest.mark.unit_test
     def test_cluster_traits(self): # pylint: disable=R0201
         """
         Test that the clustering is working as expected.
@@ -76,11 +78,13 @@ class TestHeatmap(TestCase):
               1.7413442197913358, 0.33370067057028485, 1.3256191648260216,
               0.0)))
 
+    @pytest.mark.unit_test
     def test_compute_heatmap_order(self):
         """Test the orders."""
         self.assertEqual(
             compute_traits_order(slinked), (0, 2, 1, 7, 5, 9, 3, 6, 8, 4))
 
+    @pytest.mark.unit_test
     def test_retrieve_samples_and_values(self):
         """Test retrieval of samples and values."""
         for orders, slist, tdata, expected in [
@@ -106,6 +110,7 @@ class TestHeatmap(TestCase):
                 self.assertEqual(
                     retrieve_samples_and_values(orders, slist, tdata), expected)
 
+    @pytest.mark.unit_test
     def test_get_lrs_from_chr(self):
         """Check that function gets correct LRS values"""
         for trait, chromosome, expected in [
@@ -120,6 +125,7 @@ class TestHeatmap(TestCase):
             with self.subTest(trait=trait, chromosome=chromosome):
                 self.assertEqual(get_lrs_from_chr(trait, chromosome), expected)
 
+    @pytest.mark.unit_test
     def test_process_traits_data_for_heatmap(self):
         """Check for correct processing of data for heatmap generation."""
         self.assertEqual(
@@ -132,6 +138,7 @@ class TestHeatmap(TestCase):
              [[0.5, 0.579, 0.5],
               [0.5, 0.5, 0.5]]])
 
+    @pytest.mark.unit_test
     def test_get_loci_names(self):
         """Check that loci names are retrieved correctly."""
         for organised, expected in (
-- 
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