From 9b714166cf0ebbbb098a52b97d7c9b4e3ec13a2e Mon Sep 17 00:00:00 2001
From: BonfaceKilz
Date: Fri, 4 Mar 2022 12:37:03 +0300
Subject: Add test cases for inserting and deleting data

* tests/unit/db/test_sample_data.py (test_insert_sample_data): Test inserting
data.
(test_delete_sample_data): Test deleting data.
---
 tests/unit/db/test_sample_data.py | 75 +++++++++++++++++++++++++++++++++++++++
 1 file changed, 75 insertions(+)
 create mode 100644 tests/unit/db/test_sample_data.py

(limited to 'tests/unit/db')

diff --git a/tests/unit/db/test_sample_data.py b/tests/unit/db/test_sample_data.py
new file mode 100644
index 0000000..4c03dbd
--- /dev/null
+++ b/tests/unit/db/test_sample_data.py
@@ -0,0 +1,75 @@
+import pytest
+
+from gn3.db.sample_data import insert_sample_data
+from gn3.db.sample_data import delete_sample_data
+
+
+@pytest.mark.unit_test
+def test_insert_sample_data(mocker):
+    mock_conn = mocker.MagicMock()
+    strain_id, data_id, inbredset_id = 1, 17373, 20
+    with mock_conn.cursor() as cursor:
+        cursor.fetchone.side_effect = (0, [19, ], 0)
+        mocker.patch('gn3.db.sample_data.get_sample_data_ids',
+                     return_value=(strain_id, data_id, inbredset_id))
+        insert_sample_data(conn=mock_conn,
+                           trait_name=35,
+                           data="BXD1,18,3,0,M",
+                           csv_header="Strain Name,Value,SE,Count,Sex",
+                           phenotype_id=10007)
+        calls = [mocker.call("SELECT Id FROM PublishData where Id = %s "
+                             "AND StrainId = %s",
+                             (data_id, strain_id)),
+                 mocker.call("INSERT INTO PublishData "
+                             "(StrainId, Id, value) VALUES (%s, %s, %s)",
+                             (strain_id, data_id, '18')),
+                 mocker.call("INSERT INTO PublishSE "
+                             "(StrainId, DataId, error) VALUES (%s, %s, %s)",
+                             (strain_id, data_id, '3')),
+                 mocker.call("INSERT INTO NStrain "
+                             "(StrainId, DataId, count) VALUES (%s, %s, %s)",
+                             (strain_id, data_id, '0')),
+                 mocker.call("SELECT Id FROM CaseAttribute WHERE Name = %s",
+                             ("Sex",)),
+                 mocker.call("SELECT StrainId FROM CaseAttributeXRefNew "
+                             "WHERE StrainId = %s AND "
+                             "CaseAttributeId = %s AND InbredSetId = %s",
+                             (strain_id, 19, inbredset_id)),
+                 mocker.call("INSERT INTO CaseAttributeXRefNew "
+                             "(StrainId, CaseAttributeId, Value, "
+                             "InbredSetId) VALUES (%s, %s, %s, %s)",
+                             (strain_id, 19, 'M', inbredset_id))
+                 ]
+        cursor.execute.assert_has_calls(calls, any_order=False)
+
+
+@pytest.mark.unit_test
+def test_delete_sample_data(mocker):
+    mock_conn = mocker.MagicMock()
+    strain_id, data_id, inbredset_id = 1, 17373, 20
+    with mock_conn.cursor() as cursor:
+        cursor.fetchone.side_effect = (0, [19, ], 0)
+        mocker.patch('gn3.db.sample_data.get_sample_data_ids',
+                     return_value=(strain_id, data_id, inbredset_id))
+        delete_sample_data(conn=mock_conn,
+                           trait_name=35,
+                           data="BXD1,18,3,0,M",
+                           csv_header="Strain Name,Value,SE,Count,Sex",
+                           phenotype_id=10007)
+        calls = [mocker.call("DELETE FROM PublishData WHERE "
+                             "StrainId = %s AND Id = %s",
+                             (strain_id, data_id)),
+                 mocker.call("DELETE FROM PublishSE WHERE "
+                             "StrainId = %s AND DataId = %s",
+                             (strain_id, data_id)),
+                 mocker.call("DELETE FROM NStrain WHERE "
+                             "StrainId = %s AND DataId = %s",
+                             (strain_id, data_id)),
+                 mocker.call("DELETE FROM CaseAttributeXRefNew WHERE "
+                             "StrainId = %s AND CaseAttributeId = "
+                             "(SELECT CaseAttributeId FROM "
+                             "CaseAttribute WHERE Name = %s) "
+                             "AND InbredSetId = %s",
+                             (strain_id, "Sex", inbredset_id)),
+                 ]
+        cursor.execute.assert_has_calls(calls, any_order=False)
-- 
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