From e176297bbca642f5125b5b01ae07141ebc96425d Mon Sep 17 00:00:00 2001
From: Alexander Kabui
Date: Wed, 9 Jun 2021 20:23:58 +0300
Subject: rename perf query file

---
 tests/performance/test_query.py | 126 ----------------------------------------
 1 file changed, 126 deletions(-)
 delete mode 100644 tests/performance/test_query.py

(limited to 'tests/performance')

diff --git a/tests/performance/test_query.py b/tests/performance/test_query.py
deleted file mode 100644
index 2d05d26..0000000
--- a/tests/performance/test_query.py
+++ /dev/null
@@ -1,126 +0,0 @@
-"""module contains performance tests for queries"""
-
-import time
-import sys
-
-from inspect import getmembers
-from inspect import isfunction
-
-from typing import Optional
-from functools import wraps
-from gn3.db_utils import database_connector
-
-
-def timer(func):
-    """time function"""
-    @wraps(func)
-    def wrapper_time(*args, **kwargs):
-        """time wrapper"""
-        start_time = time.perf_counter()
-        results = func(*args, **kwargs)
-        end_time = time.perf_counter()
-        run_time = end_time - start_time
-        print(f"the time taken is {run_time:.3f} seconds")
-        return results
-
-    return wrapper_time
-
-
-def query_executor(query: str,
-                   dataset_name: Optional[str] = "dataset_name",
-                   fetch_all: bool = True):
-    """function to execute a query"""
-    conn, _ = database_connector()
-    print(f"Performance test for {dataset_name}")
-
-    with conn:
-        cursor = conn.cursor()
-        cursor.execute(query)
-
-        if fetch_all:
-            return cursor.fetchall()
-        return cursor.fetchone()
-
-
-def fetch_probeset_query(dataset_name: str):
-    """contains queries for datasets"""
-
-    query = """SELECT * from ProbeSetData
-            where StrainID in (4, 5, 6, 7, 8, 9, 10, 11, 12,
-            14, 15, 17, 18, 19, 20, 21, 22, 24, 25, 26, 28,
-             29, 30, 31, 35, 36, 37, 39, 98, 99, 100, 103,
-            487, 105, 106, 110, 115,116, 117, 118, 119, 
-            120, 919, 147, 121, 40, 41, 124, 125, 128, 135,
-            129, 130, 131, 132, 134, 138, 139, 140, 141, 142, 
-            144, 145, 148, 149, 920, 922, 2, 3, 1, 1100)
-            and id in (SELECT ProbeSetXRef.DataId
-            FROM (ProbeSet, ProbeSetXRef, ProbeSetFreeze)
-            WHERE ProbeSetXRef.ProbeSetFreezeId = ProbeSetFreeze.Id
-            and ProbeSetFreeze.Name = '{}'
-            and ProbeSet.Id = ProbeSetXRef.ProbeSetId)""".format(dataset_name)
-
-    return query
-
-
-@timer
-def perf_simple_query():
-    """initial simple query test"""
-
-    query = """select * from ProbeSetData limit 1"""
-
-    _results = query_executor(query)
-
-    return {}
-
-
-@timer
-def perf_hc_m2_dataset():
-    """test the default dataset HC_M2_0606_P"""
-
-    query = fetch_probeset_query("HC_M2_0606_P")
-
-    _results = query_executor(query, "HC_M2_0606_P")
-
-    return {}
-
-
-@timer
-def perf_umutaffyexon_dataset():
-    """largest dataset in gn"""
-
-    query = fetch_probeset_query("UMUTAffyExon_0209_RMA")
-    _results = query_executor(query, "UMUTAffyExon_0209_RMA")
-    return {}
-
-
-def fetch_perf_functions():
-    """function to filter all functions strwith perf_"""
-    name_func_dict = {name: func_obj for name, func_obj in
-                      getmembers(sys.modules[__name__], isfunction)if isfunction(
-                          func_obj)
-                      and func_obj.__module__ == __name__ and name.startswith('perf_')}
-
-    return name_func_dict
-
-
-def fetch_cmd_args():
-    """function to fetch cmd args\
-    for example python file.py perf_hc_m2_dataset\
-    output [perf_hc_m2_dataset obj]"""
-    cmd_args = sys.argv[1:]
-
-    name_func_dict = fetch_perf_functions()
-
-    if len(cmd_args) > 0:
-        callables = [func_call for name,
-                     func_call in name_func_dict.items() if name in cmd_args]
-
-        return callables
-
-    return list(name_func_dict.values())
-
-
-if __name__ == '__main__':
-    func_list = fetch_cmd_args()
-    for func_obj in func_list:
-        func_obj()
-- 
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