From a3052281899a96b6be853582e9bdc5486a78a803 Mon Sep 17 00:00:00 2001
From: Alexander_Kabui
Date: Wed, 29 Jan 2025 13:49:01 +0300
Subject: refactor: Rename pheno_map to physical_map .

---
 scripts/rqtl2_wrapper.R | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'scripts')

diff --git a/scripts/rqtl2_wrapper.R b/scripts/rqtl2_wrapper.R
index accf3fa..69606b2 100644
--- a/scripts/rqtl2_wrapper.R
+++ b/scripts/rqtl2_wrapper.R
@@ -100,7 +100,7 @@ generate_cross_object  <- function(control_file_path, json_data) {
       geno_file = json_data$geno_file,
       pheno_file = json_data$pheno_file,
       gmap_file = json_data$geno_map_file,
-      pmap_file = json_data$pheno_map_file,
+      pmap_file = json_data$physical_map_file,
       phenocovar_file = json_data$phenocovar_file,
       geno_codes = json_data$geno_codes,
       alleles = json_data$alleles,
-- 
cgit 1.4.1