From 2c3e163cc69fd391ecda4e3b7a27078626a3f1b4 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Fri, 21 Jan 2022 07:23:24 +0300
Subject: Rename job scripts to fit laminar's paradigm

---
 scripts/laminar/gn3-lint.run     | 16 ++++++++++++++++
 scripts/laminar/gn3-lint.sh      | 15 ---------------
 scripts/laminar/gn3-mypy.run     | 15 +++++++++++++++
 scripts/laminar/gn3-mypy.sh      | 15 ---------------
 scripts/laminar/gn3-unittest.run | 15 +++++++++++++++
 scripts/laminar/gn3-unittest.sh  | 15 ---------------
 6 files changed, 46 insertions(+), 45 deletions(-)
 create mode 100755 scripts/laminar/gn3-lint.run
 delete mode 100644 scripts/laminar/gn3-lint.sh
 create mode 100755 scripts/laminar/gn3-mypy.run
 delete mode 100644 scripts/laminar/gn3-mypy.sh
 create mode 100755 scripts/laminar/gn3-unittest.run
 delete mode 100644 scripts/laminar/gn3-unittest.sh

(limited to 'scripts/laminar')

diff --git a/scripts/laminar/gn3-lint.run b/scripts/laminar/gn3-lint.run
new file mode 100755
index 0000000..2456740
--- /dev/null
+++ b/scripts/laminar/gn3-lint.run
@@ -0,0 +1,16 @@
+#!/bin/sh
+
+set -ex  # Abort on first error
+
+CUR_DIR=$PWD
+GN3_CI_DIR=$HOME/CI/genenetwork3/
+
+cd $GN3_CI_DIR
+git pull
+
+# Run Pylint
+env GUIX_PACKAGE_PATH="$HOME/guix-bioinformatics:$HOME/guix-past/modules" \
+    guix environment --load=guix.scm -- pylint sheepdog/worker.py gn3/ tests
+
+echo Done Running Pylint!
+cd $CUR_DIR
diff --git a/scripts/laminar/gn3-lint.sh b/scripts/laminar/gn3-lint.sh
deleted file mode 100644
index b6f0c89..0000000
--- a/scripts/laminar/gn3-lint.sh
+++ /dev/null
@@ -1,15 +0,0 @@
-#!/bin/sh
-
-set -e  # Abort on first error
-CUR_DIR=$PWD
-GN3_CI_DIR=$HOME/CI/genenetwork3/
-
-cd $GN3_CI_DIR
-git pull
-
-# Run Pylint
-env GUIX_PACKAGE_PATH="$HOME/guix-bioinformatics:$HOME/guix-past/modules" \
-    guix environment --load=guix.scm -- pylint sheepdog/worker.py gn3/ tests
-
-echo Done Running Pylint!
-cd $CUR_DIR
diff --git a/scripts/laminar/gn3-mypy.run b/scripts/laminar/gn3-mypy.run
new file mode 100755
index 0000000..43f48e8
--- /dev/null
+++ b/scripts/laminar/gn3-mypy.run
@@ -0,0 +1,15 @@
+#!/bin/sh
+
+set -ex  # Abort on first error
+CUR_DIR=$PWD
+GN3_CI_DIR=$HOME/CI/genenetwork3/
+
+cd $GN3_CI_DIR
+git pull
+
+# Run Pylint
+env GUIX_PACKAGE_PATH="$HOME/guix-bioinformatics:$HOME/guix-past/modules" \
+    guix environment --load=guix.scm -- mypy .
+
+echo Done Running MyPy!
+cd $CUR_DIR
diff --git a/scripts/laminar/gn3-mypy.sh b/scripts/laminar/gn3-mypy.sh
deleted file mode 100644
index a2a9782..0000000
--- a/scripts/laminar/gn3-mypy.sh
+++ /dev/null
@@ -1,15 +0,0 @@
-#!/bin/sh
-
-set -e  # Abort on first error
-CUR_DIR=$PWD
-GN3_CI_DIR=$HOME/CI/genenetwork3/
-
-cd $GN3_CI_DIR
-git pull
-
-# Run Pylint
-env GUIX_PACKAGE_PATH="$HOME/guix-bioinformatics:$HOME/guix-past/modules" \
-    guix environment --load=guix.scm -- mypy .
-
-echo Done Running MyPy!
-cd $CUR_DIR
diff --git a/scripts/laminar/gn3-unittest.run b/scripts/laminar/gn3-unittest.run
new file mode 100755
index 0000000..e6a65e5
--- /dev/null
+++ b/scripts/laminar/gn3-unittest.run
@@ -0,0 +1,15 @@
+#!/bin/sh
+
+set -ex  # Abort on first error
+CUR_DIR=$PWD
+GN3_CI_DIR=$HOME/CI/genenetwork3/
+
+cd $GN3_CI_DIR
+git pull
+
+# Run Pylint
+env GUIX_PACKAGE_PATH="$HOME/guix-bioinformatics:$HOME/guix-past/modules" \
+    guix environment --load=guix.scm -- python -m unittest discover
+
+echo Done Running Unittests!
+cd $CUR_DIR
diff --git a/scripts/laminar/gn3-unittest.sh b/scripts/laminar/gn3-unittest.sh
deleted file mode 100644
index 41dafe5..0000000
--- a/scripts/laminar/gn3-unittest.sh
+++ /dev/null
@@ -1,15 +0,0 @@
-#!/bin/sh
-
-set -e  # Abort on first error
-CUR_DIR=$PWD
-GN3_CI_DIR=$HOME/CI/genenetwork3/
-
-cd $GN3_CI_DIR
-git pull
-
-# Run Pylint
-env GUIX_PACKAGE_PATH="$HOME/guix-bioinformatics:$HOME/guix-past/modules" \
-    guix environment --load=guix.scm -- python -m unittest discover
-
-echo Done Running Unittests!
-cd $CUR_DIR
-- 
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