From 0a29e362bd8627b9346e2260a14c81a46e2a76d3 Mon Sep 17 00:00:00 2001
From: Arun Isaac
Date: Fri, 19 Nov 2021 16:42:00 +0530
Subject: Implement dataset metadata API endpoint.

* guix.scm: Import (gnu packages rdf).
(genenetwork3)[propagated-inputs]: Add python-sparqlwrapper.
* gn3/settings.py (SPARQL_ENDPOINT): New variable.
* gn3/api/general.py: Import datasets from gn3.db.
(dataset_metadata): New API endpoint.
* gn3/db/datasets.py: Import re, Template from string, Dict and Optional from
typing, JSON and SPARQLWrapper from SPARQLWrapper, SPARQL_ENDPOINT from
gn3.settings.
(sparql_query, dataset_metadata): New functions.
---
 guix.scm | 2 ++
 1 file changed, 2 insertions(+)

(limited to 'guix.scm')

diff --git a/guix.scm b/guix.scm
index 9bf23c8..e2e49ab 100644
--- a/guix.scm
+++ b/guix.scm
@@ -42,6 +42,7 @@
              (gnu packages python-web)
              (gnu packages python-xyz)
              (gnu packages python-science)
+             (gnu packages rdf)
              ((guix build utils) #:select (with-directory-excursion))
              (guix build-system python)
              (guix gexp)
@@ -78,6 +79,7 @@
                        ("python-redis" ,python-redis)
                        ("python-requests" ,python-requests)
                        ("python-scipy" ,python-scipy)
+                       ("python-sparqlwrapper" ,python-sparqlwrapper)
                        ("r-optparse" ,r-optparse)
                        ("r-qtl" ,r-qtl)
                        ("r-rjson" ,r-rjson)
-- 
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