From fed7009b5eec9cc8b9370d4fb8486c7e4136b3d4 Mon Sep 17 00:00:00 2001
From: Alexander Kabui
Date: Wed, 23 Jun 2021 10:18:54 +0300
Subject: minor fixes for biweight script

---
 gn3/computations/biweight.py | 10 ++++++----
 gn3/settings.py              |  2 +-
 2 files changed, 7 insertions(+), 5 deletions(-)

(limited to 'gn3')

diff --git a/gn3/computations/biweight.py b/gn3/computations/biweight.py
index 6d031ad..0377bdf 100644
--- a/gn3/computations/biweight.py
+++ b/gn3/computations/biweight.py
@@ -19,7 +19,9 @@ def calculate_biweight_corr(trait_vals: List,
     cmd = [command, path_to_script] + [args_1] + [args_2]
 
     results = subprocess.check_output(cmd, universal_newlines=True)
-
-    (corr_coeff, p_val) = tuple([float(y) for y in results.split()])
-
-    return (corr_coeff, p_val)
+    try:
+        (corr_coeff, p_val) = tuple(
+            [float(y.strip()) for y in results.split()])
+        return (corr_coeff, p_val)
+    except Exception as e:
+        raise e
diff --git a/gn3/settings.py b/gn3/settings.py
index 770ba3d..f4866d5 100644
--- a/gn3/settings.py
+++ b/gn3/settings.py
@@ -23,4 +23,4 @@ SQLALCHEMY_TRACK_MODIFICATIONS = False
 GN2_BASE_URL = "http://www.genenetwork.org/"
 
 # biweight script
-BIWEIGHT_RSCRIPT = "~/genenetwork3/script/calculate_biweight.R"
+BIWEIGHT_RSCRIPT = "~/genenetwork3/scripts/calculate_biweight.R"
-- 
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