From fe39bccc23186d0a0f0b51a792d4577aaca88bd1 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Mon, 4 Oct 2021 04:46:14 +0300
Subject: Remove file I/O statements

Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/non-clustered-heatmaps-and-flipping.gmi

* Remove file I/O from the function. If file I/O is needed, it will be
  provided outside of this function.
---
 gn3/heatmaps.py | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

(limited to 'gn3')

diff --git a/gn3/heatmaps.py b/gn3/heatmaps.py
index adbfbc6..42231bf 100644
--- a/gn3/heatmaps.py
+++ b/gn3/heatmaps.py
@@ -224,7 +224,6 @@ def build_heatmap(traits_names, conn: Any):
         process_traits_data_for_heatmap(
             organised, traits_ids, chromosome_names),
         clustered,
-        "single_heatmap_{}".format(random_string(10)),
         y_axis=tuple(
             ordered_traits_names[traits_ids[order]]
             for order in traits_order),
@@ -355,6 +354,9 @@ def generate_clustered_heatmap(
         loci_names: Sequence[Sequence[str]] = tuple(),
         output_dir: str = TMPDIR,
         colorscale=((0.0, '#0000FF'), (0.5, '#00FF00'), (1.0, '#FF0000'))):
+        data, clustering_data, x_axis=None, x_label: str = "", y_axis=None,
+        y_label: str = "", loci_names: Sequence[Sequence[str]] = tuple(),
+        colorscale=((0.0, '#0000FF'), (0.5, '#00FF00'), (1.0, '#FF0000'))):
     """
     Generate a dendrogram, and heatmaps for each chromosome, and put them all
     into one plot.
@@ -419,6 +421,4 @@ def generate_clustered_heatmap(
         showlegend=True,
         showscale=True,
         selector={"name": x_axis[-1]})
-    image_filename = "{}/{}.html".format(output_dir, image_filename_prefix)
-    fig.write_html(image_filename)
-    return image_filename, fig
+    return fig
-- 
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