From db6f7c5099445ce52ff8869438aabd4dc3b332f3 Mon Sep 17 00:00:00 2001
From: zsloan
Date: Mon, 22 May 2023 17:39:52 +0000
Subject: Use f-string for setting genofile_path

Also set default value for os.environ.get("GENENETWORK_FILES")
---
 gn3/db/datasets.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'gn3')

diff --git a/gn3/db/datasets.py b/gn3/db/datasets.py
index 4fdf797..4372818 100644
--- a/gn3/db/datasets.py
+++ b/gn3/db/datasets.py
@@ -13,7 +13,7 @@ def retrieve_sample_list(group: str):
     """
 
     samplelist = []
-    genofile_path = os.environ.get("GENENETWORK_FILES") + "/genotype/" + group + ".geno"
+    genofile_path = f"{os.environ.get("GENENETWORK_FILES", "/home/gn2/production/genotype_files/")}/genotype/{group}.geno"
     if os.path.isfile(genofile_path):
         with open(genofile_path, encoding="utf-8") as genofile:
             line = ""
-- 
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